si:dkey-183c6.7 (LOC108267942)


Basic Information

Item Value
gene id si:dkey-183c6.7
gene name LOC108267942
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11402027 ~ 11415897 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU74413
CGGTTTTAATGGCTCTCTGGGCTGCATGGCTGTTGGAGGGCTTTTATTCACATTAAGCTGGAGAACGCATGTTTTCTCCATTATTTGTGCCTTCCTCTCTTCCTATGCAAACATCGCCTTGAGCAATCTGCTGGCAAATgtgggtcTCCCTGCCAGCAGCTGGGCCGCCACACTAACTGTCAGTCTTATGCTGTTAGTGAGTGGGCGGAGCCTCTCCACTTACCGCATCGCCATTGGCCGAGACAGCTCACTTGGAAACCCC
>XM_026936784.2
TTTACATTAACCTTCAGAGTGGAGAGGAGAACATCAGAGCCAGAGAGTGACAAAGAGAGGGAGTGGCAAAGAGAATTAGTTAGAAAGAGTGAAACACTAAAGCAAACCTGTCCAcaacagagggaaagagagagaaagagactcaGCTGCTTGATTCCTGTAGTTATCTGTTAGTGATGTTTATGACTATAAAAACATGTGAGCAGCCAAAGGGCCTCAAGCAGCACCTGATCCAGAAGCTGCTGTACTGCACAGGAGAAATGGAGCACTTTCACGCATACATGCAGGATCAGGCTTTCCTTATGCAGCTGCTGGAGTGGTTATTGCGAGGTGTCTCTGGTGTGATCATGGTGAATAACCCTTTGAGTGGAGCTCTGATTCTTATTGCTCTGTCAGTTGCCAGTCCCTGGCAGGTCCTGCTGGGAAGCCTGGGACTCCTCTCCTCCACAGTCATGGCAATCCTCATTGGCCAGGAACAAGCAGAGATTTCCAGGGGTGAACACGGTTATAATGGGATGCTGGTGGCCTTATTGATCGGTGTGTTCAGCAATGCAGGAGACTGGTACTGGTGGCTACTGCTGCCTGCATGTCTCGCTGGAGCCACAACtacatTTCTACACAGTGGCATGGCTGCTGTGTTGGACAGATGGGATGTGCCTGTAAGTGTGTTCCCCTTCAACACTGTCCTGCTGCTGTATTTGGCCTGCACCAGTATTGAAAACCCATACTACCCCAACCATCCAGCCCTGCCACAGGTGGCAACACTGATCATCAACAGCACACACCTCGACATACCTCAGcTTGTGCAGGGTGCAGTGTTGGGAGTGGGGCAGATCTATGCTTGTGATGCACTGGGGTCGTCTCTAATCATTCTAGCAGCTGTGCTGCTATACTCTCCAGTCCAGGCTTTTCACGCACTGCTGGGATCAAGTCTCGGGGTACTGGCAGgccTTTCTGTTGCAGTGCAGCAGGATGTTTTATACACTTATGCCGGTTTTAATGGCTCTCTGGGCTGCATGGCTGTTGGAGGGCTTTTATTCACATTAAGCTGGAGAACGCATGTTTTCTCCATTATTTGTGCCTTCCTCTCTTCCTATGCAAACATCGCCTTGAGCAATCTGCTGGCAAATgtgggtcTCCCTGCCAGCAGCTGGGCCGCCACACTAACTGTCAGTCTTATGCTGTTAGTGAGTGGGCGGAGCCTCTCCACTTACCGCATCGCCATTGGCCGAGACAGCTCACTTGGAAACCCCTTACATACTCCCAGCCAATGTGCTGAGGCTAACACAGACAGTAGTTCTGTGTgacgcacacactctctcacacacacacacacacacacacacacacacacacacacatacacacacacacacacacatatatatacacactctcacaatgAACAATGTTTATTAATGGTATCCGGTCCACAAATTTTCTCAACTAATTATGTGTCATCGCTCTCATCCTGAAATGTCTGATGAATGCATCC

Function

NR:

description
urea transporter 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU74413 False 262 lncRNA 0.53 3 11402269 11403021
XM_026936784.2 True 1495 mRNA 0.49 9 11402027 11415897

Neighbor

gene id symbol gene type direction distance location
ccdc166 NA coding downstream 20108 11377829 ~ 11381919 (-)
LOC113538167 gmpr2,LOC108267954,LOC107753927,LOC107668803,LOC101077150 coding downstream 54439 11342706 ~ 11347588 (-)
LOC117597109 LOC108267929,LOC108261535 coding downstream 60844 11320035 ~ 11341183 (-)
homezb LOC108267927 coding downstream 137937 11258688 ~ 11264090 (-)
tinf2 LOC108267930 coding downstream 138961 11244771 ~ 11263066 (-)
syt4 syt4,LOC107691948,LOC107562593,LOC107742284,LOC107668880 coding upstream 10401 11426298 ~ 11432252 (-)
LOC113540344 LOC108267931,LOC108267738,LOC108267932,LOC108267740,LOC108267739,LOC108267937 coding upstream 93834 11509731 ~ 11519651 (-)
rab39bb rab39b,LOC103045353,LOC107742286,LOC107753937,LOC107691951,LOC107562605,LOC103034714 coding upstream 206988 11622885 ~ 11626845 (-)
si:dkey-172j4.3 LOC108434852,LOC108267497,LOC107753941,LOC107742290 coding upstream 301448 11717345 ~ 11796600 (-)
zgc:109889 zgc:109889,LOC108267204,LOC108434857,LOC105007310,LOC107742291,LOC107562726 coding upstream 418471 11834368 ~ 11860113 (-)
G62735 LOC108261673,LOC108267931,LOC108267938,LOC108267738,LOC108267739,LOC108267740,LOC108267935,LOC108267932 non-coding downstream 35846 11365255 ~ 11366181 (-)
G62754 NA non-coding downstream 40598 11321370 ~ 11361429 (-)
LOC117596984 NA non-coding downstream 43473 11350697 ~ 11358554 (-)
G62743 NA non-coding downstream 56068 11312414 ~ 11345959 (-)
LOC117596980 NA non-coding downstream 319015 11080531 ~ 11083012 (-)
G62734 LOC108267738,LOC108267739,LOC108267931,LOC108267241,LOC108267938,LOC108261673,LOC108267740,LOC108267935 non-coding upstream 25220 11441117 ~ 11471047 (-)
G62791 NA non-coding upstream 35541 11451438 ~ 11547288 (-)
LOC117596982 NA non-coding upstream 44173 11460070 ~ 11463038 (-)
G62813 LOC108267932,LOC108267938,LOC108267738,LOC108267937,LOC108267241,LOC108267931,LOC108267739,LOC108267740,LOC108267929 non-coding upstream 141687 11557584 ~ 11607947 (-)
G62823 LOC108267738,LOC108267739,LOC108267931,LOC108267932,LOC108267938,LOC108267935,LOC108267241 non-coding upstream 155088 11570985 ~ 11605575 (-)
LOC113540328 LOC108267738,LOC108267931,LOC108267739,LOC108267932,LOC108267933,LOC108267740,LOC108261673,LOC108267241,LOC108267937,LOC108267929 other downstream 41983 11266384 ~ 11360044 (-)
LOC113538166 LOC108267929,LOC108261535,LOC108267954,LOC103358416,LOC107753927 other downstream 88411 11286449 ~ 11313616 (-)
mrpl52 mrpl52 other downstream 219658 11177685 ~ 11182369 (-)
nedd8 nedd8,LOC107588156,LOC108440049,LOC107562413,LOC103040682,LOC103358415,LOC106608856 other downstream 491816 10907025 ~ 10910211 (-)
svep1 svep1 other downstream 538529 10775252 ~ 10863498 (-)
LOC117597110 LOC108267738,LOC108267739,LOC108267931,LOC108267932,LOC108267938,LOC108261673,LOC108267241,LOC108267937,LOC108267740,LOC108267935 other upstream 108929 11524826 ~ 11535243 (-)
htr2cl1 LOC108267122,LOC108434824 other upstream 446728 11862625 ~ 11966903 (-)
si:dkey-165a24.9 si:dkey-165a24.9,LOC108267153,LOC108434867,LOC105903083,LOC107572570,LOC107753961,LOC107659726,LOC107588125 other upstream 831065 12246962 ~ 12249754 (-)
LOC113539775 NA other upstream 856321 12272218 ~ 12277669 (-)
tmem256 tmem256,LOC107659713,LOC107564775,LOC107560291 other upstream 1068826 12484723 ~ 12489562 (-)

Expression


Co-expression Network