si:dkey-112a7.4 (LOC108268066)


Basic Information

Item Value
gene id si:dkey-112a7.4
gene name LOC108268066
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 12292491 ~ 12295133 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU74787
AATCCCCAAAGCAGAGTTACGACACAATTAGCTGTCCGTGTAAAACAGCCTACTTCCGGCTTGCAATAGTGAAAACAAGCAGCCTTGTTGTTTAAGCCGCTTTACAGACGTCTTCTCTCCTCCAGGACTAACGTTAAACGGGTGGTTTAAAGCGAGCTCTCAGCGCTGTTACAGCACCAACACAAGCTCTTTCAGGACACAAACGAGATATATGAAGAGATCGTGTGAATTTGAGCAGCTAGACGCGGCCGCTGTCATGTACGGAAGTGCAGGTCTGCCCGAGCTCATCCCGCCCGCATGCGCACTGCGACCCAGCGCCGTCCTGCCCTACAGCCCCGGCCCCGGAGCCGGGGACAGACACGGGGCACAGCTGTCCTCTAACCCCCGCAGGATGCACAGAGCCCCCAAACTCGGACAGATCGGCCGCTCCAAGAGAGTGGACATTGATGATGAAGACCTGGATGATATCATGAACAACAACAGGAGCTTCCCTCTTTCCATCAGTGTCTCACCTGTTGCCTAAAGCATGCTGGACTGTGCCAAAGCTGCATCGTGGCCAACATCATTAATCAAGTTTGAACCATTACAGAATGCACACAATTACTATGAAGTGgaatcatttaaacacaagtgcacacacaatatcagctctctctctctctctctctctctctctctctctctctgtctgtctctctctctctctctctgtctctctctgtatttttctctgtcttttatCTCAGGACTGCTGACTGTTCAGCGCTCTGCTCTGATCATTGCTTGTTCAGCACTTGTAACTTTAATCTTGTGGCTGTGACATTGACTGTGTTGTCGTTACCTCTCTGTTCACACTGCATTTTGATACTGAGATTGAAAATGATTTCTAAAAGCACAGGGctatattcaaaaaaaaaaaaaagcactttactGAGCGGATAAATACCAAAGGTAGGTTTGCTCCGCTCTCACAAACGTGTTCTGTGAAAGTCTGTTAACCTGTAACACACCATTAGCTTCGGATTCACAGTTACCTTGGAAACTGGGGTCTTTTGGCATGTTTCTGCTCCCTGGTTATTTAACAGTTAAAGTATATTTGCAGGGAGTGCTTTTTCACCTTTGTTCTGAATGAATTACTCTCTTAAATGGTCTAATGTAATGGTTGTGCTAATATGTGGTTTGTGCATTATAATTGACTGGCATGAAATTGCTTGttgattttcattttgtatttgcaAATTGCATTTTTGACAAATAAAGTATGCAT
>TU74788
AATCCCCAAAGCAGAGTTACGACACAATTAGCTGTCCGTGTAAAACAGCCTACTTCCGGCTTGCAATAGTGAAAACAAGCAGCCTTGTTGTTTAAGCCGCTTTACAGACGTCTTCTCTCCTCCAGGACTAACGTTAAACGGGTGGTTTAAAGCGAGCTCTCAGCGCTGTTACAGCACCAACACAAGCTCTTTCAGGACACAAACGAGATATATGAAGAGATCGTGTGAATTTGAGCAGCTAGACGCGGCCGCTGTCATGTACGGAAGTGCAGGTCTGCCCGAGCTCATCCCGCCCGCATGCGCACTGCGACCCAGCGCCGTCCTGCCCTACAGCCCCGGCCCCGGAGCCGGGGACAGACACGGGGCACAGCTGTCCTCTAACCCCCGCAGGATGCACAGAGCCCCCAAACTCGGACAGATCGGCCGCTCCAAGAGAGTGGACATTGATGATGAAGACCTGGATGATATCATGAACAACAACAGGAGCTTCCCTCTTTCCATCAGTGTCTCACCTGTTGCCTAAAGCATGCTGGACTGTGCCAAAGCTGCATCGTGGCCAACATCATTAATCAAGTTTGAACCATTACAGAATGCACACAATTACTATGAAGTGgaatcatttaaacacaagtgcacacacaatatcagctctctctctctctctctctctgtctctctctctctctctctgtctctctctgtatttttctctgtcttttatCTCAGGACTGCTGACTGTTCAGCGCTCTGCTCTGATCATTGCTTGTTCAGCACTTGTAACTTTAATCTTGTGGCTGTGACATTGACTGTGTTGTCGTTACCTCTCTGTTCACACTGCATTTTGATACTGAGATTGAAAATGATTTCTAAAAGCACAGGGctatattcaaaaaaaaaaaaaagcactttactGAGCGGATAAATACCAAAGGTAGGTTTGCTCCGCTCTCACAAACGTGTTCTGTGAAAGTCTGTTAACCTGTAACACACCATTAGCTTCGGATTCACAGTTACCTTGGAAACTGGGGTCTTTTGGCATGTTTCTGCTCCCTGGTTATTTAACAGTTAAAGTATATTTGCAGGGAGTGCTTTTTCACCTTTGTTCTGAATGAATTACTCTCTTAAATGGTCTAATGTAATGGTTGTGCTAATATGTGGTTTGTGCATTATAATTGACTGGCATGAAATTGCTTGttgattttcattttgtatttgcaAATTGCATTTTTGACAAATAAAGTATGCAT
>XM_026936132.2
AGTGACGTGCTCAGAAACGAGGAAATCCCCAAAGCAGAGTTACGACACAATTAGCTGTCCGTGTAAAACAGCCTACTTCCGGCTTGCAATAGTGAAAACAAGCAGCCTTGTTGTTTAAGCCGCTTTACAGACGTCTTCTCTCCTCCAGGACTAACGTTAAACGGGTGGTTTAAAGCGAGCTCTCAGCGCTGTTACAGCACCAACACAAGCTCTTTCAGGACACAAACGAGATATATGAAGAGATCGTGTGAATTTGAGCAGCTAGACGCGGCCGCTGTCATGTACGGAAGTGCAGGTCTGCCCGAGCTCATCCCGCCCGCATGCGCACTGCGACCCAGCGCCGTCCTGCCCTACAGCCCCGGCCCCGGAGCCGGGGACAGACACGGGGCACAGCTGTCCTCTAACCCCCGCAGGATGCACAGAGCCCCCAAACTCGGACAGATCGGCCGCTCCAAGAGAGTGGACATTGATGATGAAGACCTGGATGATATCATGAACAACAACAGGAGCTTCCCTCTTTCCATCAGTGTCTCACCTGTTGCCTAAAGCATGCTGGACTGTGCCAAAGCTGCATCGTGGCCAACATCATTAATCAAGTTTGAACCATTACAGAATGCACACAATTACTATGAAGTGgaatcatttaaacacaagtgcacacacaatatcagctctctctctctctctctctctctctctctctctctctgtctgtctctctctctctctctctgtctctctctgtatttttctctgtcttttatCTCAGGACTGCTGACTGTTCAGCGCTCTGCTCTGATCATTGCTTGTTCAGCACTTGTAACTTTAATCTTGTGGCTGTGACATTGACTGTGTTGTCGTTACCTCTCTGTTCACACTGCATTTTGATACTGAGATTGAAAATGATTTCTAAAAGCACAGGGctatattcaaaaaaaaaaaaaagcactttactGAGCGGATAAATACCAAAGGTAGGTTTGCTCCGCTCTCACAAACGTGTTCTGTGAAAGTCTGTTAACCTGTAACACACCATTAGCTTCGGATTCACAGTTACCTTGGAAACTGGGGTCTTTTGGCATGTTTCTGCTCCCTGGTTATTTAACAGTTAAAGTATATTTGCAGGGAGTGCTTTTTCACCTTTGTTCTGAATGAATTACTCTCTTAAATGGTCTAATGTAATGGTTGTGCTAATATGTGGTTTGTGCATTATAATTGACTGGCATGAAATTGCTTGttgattttcattttgtatttgcaAATTGCATTTTTGACAAATAAAGTATGCATGATTATCATG
>XM_034304074.1
accaccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcctttGTGTTGACAGATCAACACGAGGAAACACGACTTGACACACGGTTACAGAACGGCTAGCTTGGGGTGTTTATTACACACAGCGGTGGTTTAAAGCGAGCTCTCAGCGCTGTTACAGCACCAACACAAGCTCTTTCAGGACACAAACGAGATATATGAAGAGATCGTGTGAATTTGAGCAGCTAGACGCGGCCGCTGTCATGTACGGAAGTGCAGGTCTGCCCGAGCTCATCCCGCCCGCATGCGCACTGCGACCCAGCGCCGTCCTGCCCTACAGCCCCGGCCCCGGAGCCGGGGACAGACACGGGGCACAGCTGTCCTCTAACCCCCGCAGGATGCACAGAGCCCCCAAACTCGGACAGATCGGCCGCTCCAAGAGAGTGGACATTGATGATGAAGACCTGGATGATATCATGAACAACAACAGGAGCTTCCCTCTTTCCATCAGTGTCTCACCTGTTGCCTAAAGCATGCTGGACTGTGCCAAAGCTGCATCGTGGCCAACATCATTAATCAAGTTTGAACCATTACAGAATGCACACAATTACTATGAAGTGgaatcatttaaacacaagtgcacacacaatatcagctctctctctctctctctctctctctctctctctctctgtctgtctctctctctctctctctgtctctctctgtatttttctctgtcttttatCTCAGGACTGCTGACTGTTCAGCGCTCTGCTCTGATCATTGCTTGTTCAGCACTTGTAACTTTAATCTTGTGGCTGTGACATTGACTGTGTTGTCGTTACCTCTCTGTTCACACTGCATTTTGATACTGAGATTGAAAATGATTTCTAAAAGCACAGGGctatattcaaaaaaaaaaaaaagcactttactGAGCGGATAAATACCAAAGGTAGGTTTGCTCCGCTCTCACAAACGTGTTCTGTGAAAGTCTGTTAACCTGTAACACACCATTAGCTTCGGATTCACAGTTACCTTGGAAACTGGGGTCTTTTGGCATGTTTCTGCTCCCTGGTTATTTAACAGTTAAAGTATATTTGCAGGGAGTGCTTTTTCACCTTTGTTCTGAATGAATTACTCTCTTAAATGGTCTAATGTAATGGTTGTGCTAATATGTGGTTTGTGCATTATAATTGACTGGCATGAAATTGCTTGttgattttcattttgtatttgcaAATTGCATTTTTGACAAATAAAGTATGCATGATTATCATG

Function

NR:

description
PREDICTED: uncharacterized protein LOC108247708 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU74787 False 1267 TUCP 0.45 3 12292514 12295123
TU74788 False 1247 lncRNA 0.45 4 12292514 12295123
XM_026936132.2 True 1300 mRNA 0.45 3 12292491 12295133
XM_034304074.1 False 1264 mRNA 0.45 3 12292743 12295133

Neighbor

gene id symbol gene type direction distance location
tifa tifa,LOC100304890 coding upstream 85616 12198342 ~ 12206875 (+)
tnfsf10l LOC108268320,LOC108410411,LOC103041464,LOC107691962,LOC107562848,LOC107742295,LOC107753950 coding upstream 169888 12099805 ~ 12122603 (+)
si:dkey-171c9.3 LOC108268329 coding upstream 199438 12086179 ~ 12093053 (+)
gpr185b gpr185b,LOC108267436,LOC107669001,LOC107562838,LOC107588216,LOC107742332,LOC107691958 coding upstream 468343 11818766 ~ 11824148 (+)
zgc:92429 zgc:92429,LOC108267498,LOC103044742,LOC108434854 coding upstream 575752 11707459 ~ 11716739 (+)
nlgn2a nlgn2,nlgn2a,LOC103033407,LOC107564776,LOC107753966,LOC107659731,LOC107750775,LOC107664280 coding downstream 213741 12508874 ~ 12670541 (+)
LOC113540507 LOC108267598 coding downstream 417708 12712841 ~ 12716732 (+)
epoa epo coding downstream 423120 12718253 ~ 12733478 (+)
gigyf1a gigyf1 coding downstream 447124 12742257 ~ 12767904 (+)
wrap53 wrap53 coding downstream 482044 12777177 ~ 12788225 (+)
G63137 si:dkey-165a24.9,LOC108267153,LOC108434867,LOC107572570,LOC107753961,LOC107659726,LOC107588125 non-coding upstream 42703 12248663 ~ 12249788 (+)
G63061 NA non-coding upstream 288268 12003990 ~ 12004223 (+)
G62983 NA non-coding upstream 354732 11934829 ~ 11937759 (+)
G62967 NA non-coding upstream 379385 11912850 ~ 11913106 (+)
G62932 NA non-coding upstream 428808 11862633 ~ 11863683 (+)
G63241 NA non-coding downstream 60417 12355550 ~ 12357681 (+)
G63242 NA non-coding downstream 62699 12357832 ~ 12358248 (+)
LOC113540557 NA non-coding downstream 473452 12768585 ~ 12772822 (+)
G63547 NA non-coding downstream 506761 12801894 ~ 12834330 (+)
LOC117596991 NA non-coding downstream 627737 12922870 ~ 12926987 (+)
si:ch211-200p22.4 LOC108267499,LOC108434851 other upstream 587155 11644901 ~ 11705336 (+)
LOC117596972 LOC108267738,LOC108267932,LOC108267931,LOC108267739,LOC108267937,LOC108261673,LOC108267938,LOC108267933,LOC108267935,LOC108267740 other upstream 687261 11590715 ~ 11605230 (+)
c4h4orf48 c7h4orf48 other upstream 1629080 10657357 ~ 10663411 (+)
trnak-cuu_19 NA other upstream 1797021 10495398 ~ 10495470 (+)
trnak-cuu_18 NA other upstream 1800622 10491797 ~ 10491869 (+)
tmem88b tmem88,bcl6b,LOC108267673 other downstream 911524 13206657 ~ 13219859 (+)
slc16a13 slc16a13 other downstream 980329 13275462 ~ 13285834 (+)
G63903 NA other downstream 1123244 13418377 ~ 13418696 (+)
LOC113539889 LOC108267838 other downstream 1173419 13468552 ~ 13475037 (+)
cited1 cited1 other downstream 1263490 13558623 ~ 13562266 (+)

Expression


Co-expression Network