G63666


Basic Information

Item Value
gene id G63666
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13199007 ~ 13199862 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU75429
taaaatacattttatttaacttctTTCTTCTATTTATTGACTATGTTATGTTCTCCTTGAGATGTCTGTTGTCCATTATTTTAGTAAGTTTTGGAAGGAGAGTTTCAGGGGTGCTTAGTTAATAAAAGGAGTTATGTTTTCTGGCCTTTAAAGTGTCCTCATGGCCTGATGATGCGTAACCCCATGAGGAGAGTTTGAGTGACTCCTCTCTCCTGTAGAGTGTAGAAGGCAGAGCAGTTGTAGTTTGTCTAACTAAAAGCAGTCTTTTGTATGGGAAgcaaaaggctttttttttttttttaaccaacattAGCAGCAAAATTGGacataaatgcaaataaattcagAGCCGTTTCTAATTATCTACATATTTCGTGGTGCTTGagtttgtttgaaatgttttatatgaGAGAACAGTCACTATGCCAACCATAAGGCAGAATCTCTGGTTATACTTAATCTGACTGCAGTTGGTTATTATAAACCAAATATTGAGGGtttaagtgtttttgtttgaaaaataacatgaaactGTAAATACTGTGGCATTTTACTGGAATGAGGTTAAGTGTGAATCGAATTATTCATTCGACTGAAactgtaatttctttttaattctgtCTTAAGCTTGAATCAATTATTTCACGTATAATGAAACTGTTGGTTACGATTATGATACAGAAGGTGCTGTTCCCTTTGAACTACTCTGtctttcagttttgtttctaaagaaaaaatctatttttcctGTTGCAATATATCTTCTGTTTgtggtcatttatttaaaattctgcACTGTTTTAGAGAGTTCACACAGAAAGCAAACTGAGCCAGACACGTCTTAAACACTTCATGA

Function

GO: NA

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
TU75429 True 856 lncRNA 0.34 1 13199007 13199862

Neighbor

gene id symbol gene type direction distance location
kdm6ba kdm6b,LOC106608825 coding upstream 458 13116216 ~ 13198549 (+)
dnah2 dnah2 coding upstream 83840 12980849 ~ 13115167 (+)
serpinh2 LOC108267141,LOC108412061 coding upstream 222570 12951069 ~ 12976437 (+)
efnb3b efnb3,efnb3b,LOC107597046,LOC106577756 coding upstream 337790 12795941 ~ 12861217 (+)
wrap53 wrap53 coding upstream 410782 12777177 ~ 12788225 (+)
trip6 trip6,LOC103041331 coding downstream 32772 13232634 ~ 13242400 (+)
mettl3 mettl3,LOC107659734,LOC107595277 coding downstream 46123 13245985 ~ 13251814 (+)
agfg2 LOC108267520,LOC108442826 coding downstream 112018 13311880 ~ 13327219 (+)
si:ch73-335l21.1 LOC108267519,LOC105020633 coding downstream 128171 13328033 ~ 13375050 (+)
si:ch73-335l21.2 LOC108268347,LOC108442822 coding downstream 191947 13391809 ~ 13394172 (+)
G63696 NA non-coding upstream 63147 13135659 ~ 13135860 (+)
G63685 NA non-coding upstream 79330 13119468 ~ 13119677 (+)
LOC117596991 NA non-coding upstream 272020 12922870 ~ 12926987 (+)
G63547 NA non-coding upstream 364677 12801894 ~ 12834330 (+)
LOC113540557 NA non-coding upstream 426185 12768585 ~ 12772822 (+)
LOC117597082 NA non-coding downstream 59012 13258874 ~ 13267034 (+)
G63889 NA non-coding downstream 187736 13387598 ~ 13387954 (+)
G63901 NA non-coding downstream 217359 13417221 ~ 13417441 (+)
G63898 NA non-coding downstream 259500 13459362 ~ 13467726 (+)
G63936 NA non-coding downstream 304598 13504460 ~ 13504719 (+)
si:dkey-112a7.4 LOC108268066 other upstream 903874 12292491 ~ 12295133 (+)
si:ch211-200p22.4 LOC108267499,LOC108434851 other upstream 1493671 11644901 ~ 11705336 (+)
LOC117596972 LOC108267738,LOC108267932,LOC108267931,LOC108267739,LOC108267937,LOC108261673,LOC108267938,LOC108267933,LOC108267935,LOC108267740 other upstream 1593777 11590715 ~ 11605230 (+)
c4h4orf48 c7h4orf48 other upstream 2535596 10657357 ~ 10663411 (+)
trnak-cuu_19 NA other upstream 2703537 10495398 ~ 10495470 (+)
tmem88b tmem88,bcl6b,LOC108267673 other downstream 6795 13206657 ~ 13219859 (+)
slc16a13 slc16a13 other downstream 75600 13275462 ~ 13285834 (+)
G63903 NA other downstream 218515 13418377 ~ 13418696 (+)
LOC113539889 LOC108267838 other downstream 268690 13468552 ~ 13475037 (+)
cited1 cited1 other downstream 358761 13558623 ~ 13562266 (+)

Expression


Co-expression Network