LOC117597082


Basic Information

Item Value
gene id LOC117597082
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13258874 ~ 13267034 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU75440
AGCCCTACAAACCCATCTTCATTTCATATTTTGACAAAGACTATGGCTTTGCTTTCTCAGCTACACAAGTCAGATGAGCTGGTTTATTAtggtgtttaatatttttaacctTGCTGTAACCCAAAGAAACATGTGCATGTATAATGATAAGGTCTCTTGGATAACAGACACTCCCACCATGCCACACCTCCAACACCACTCAGGTAAAGGAATTCACAACATTCTCTTTACACGAGGATTATTATGGGCGATTTAGCACTTTTGTGTATGCAAACTGCCATTTAAATAGCCACTTACCAGTTTTAGTGAGCAGTGACCAGGGAGAGGAATTTGAAGTTTAAAATGTGCGTCACAGCAGAAGTGGCTCCAGCGTCGCGCGGATCTCTGAGCCTCAGCTGAGGGTTTCACCTCTCAGATTACTGTGGTTTCACAGGACAACGAGCAGGAGGCGTCAGGAGAAGGTGccgagttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatcacagcACTGAGAGCTCTGGCGCTTTTTAAACGGATTTAGAGCGACCTCAGGCTCCCagccctcctcctcctccttctcctcctcctccttctctcaaTGGAGCTCCGAGACTCTGGCAAGTCTCCAAATCTCCACACAGACAACCCATGCAGCCGTTAATGATCTGGATCCCAAGGAGCACGACCTGCAGGACGCCCAGACCTAGTAGGATGGAGAAGAGAACGATGTGCCAGAGGACTGCATTTTCCGGGAAAGCACAGACAGACCACTGAGATTTATCCACCAAGTAGCTGGTATTActgcagacagagaaagagaaaaagtagATCATATAAGTTGTGCATTCAGATAATTAAAATTTCAATCAGGATTATTCAGAGCTAAAGCATTCAGTGTACTCAATTTATACACACCAATAAAATATGTctgtgaaaagatttttttttggtatttggcATCAgtagcacactcacacatagaTATAAGTACTTAACCAAGAATATAATTAAAACCGTATTTATTTGACTTGAGTCTAGGGCTCAGTTACTCTTGGGGCAGGTTCTCAAAGGGATATTCCCAGGTCCCTGAGTCCAGGCGGCATTTTGGTCCAATAGCCAGTGCTGCAGAGGCCACGCTGGTGTTGTATGTTGCCCCAATTAGACCAAATGCAGAGGAAAACACAGAGC
>XR_004578006.1
GAGCTCTGGCGCTTTTTAAACGGATTTAGAGCGACCTCAGGCTCCCagccctcctcctcctccttctcctcctcctccttctctcaaTGGAGCTCCGAGACTCTGGCAAGTCTCCAAATCTCCACACAGACAACCCATGCAGCCGTTAATGATCTGGATCCCAAGGAGCACGACCTGCAGGACGCCCAGACCTAGTAGGATGGAGAAGAGAACGATGTGCCAGAGGACTGCATTTTCCGGGAAAGCACAGACAGACCACTGAGATTTATCCACCAAGTAGCTGATCTACAAGAATTGaactttttccccccaattcAGTAGTTTTACTCACGCGGCAACGATTTCCACAGCAGCCCTTCCCACAGCAACCCTTTCCACCAGCTCTGACAGCCGAACAGCTTGGACACAGCATCTAATGGACAatgaaatatcattaaataaaaatataaaatgacttgTACAATGAGAGTTATTATATCTGTTATAAAATAAGTGCTTACACTGTG

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU75440 True 1193 lncRNA 0.45 2 13258874 13266479
XR_004578006.1 False 506 lncRNA 0.47 3 13259391 13267034

Neighbor

gene id symbol gene type direction distance location
mettl3 mettl3,LOC107659734,LOC107595277 coding upstream 7060 13245985 ~ 13251814 (+)
trip6 trip6,LOC103041331 coding upstream 16474 13232634 ~ 13242400 (+)
kdm6ba kdm6b,LOC106608825 coding upstream 60325 13116216 ~ 13198549 (+)
dnah2 dnah2 coding upstream 143707 12980849 ~ 13115167 (+)
serpinh2 LOC108267141,LOC108412061 coding upstream 282437 12951069 ~ 12976437 (+)
agfg2 LOC108267520,LOC108442826 coding downstream 44846 13311880 ~ 13327219 (+)
si:ch73-335l21.1 LOC108267519,LOC105020633 coding downstream 60999 13328033 ~ 13375050 (+)
si:ch73-335l21.2 LOC108268347,LOC108442822 coding downstream 124775 13391809 ~ 13394172 (+)
dvl2 dvl2 coding downstream 132401 13399435 ~ 13416861 (+)
acadvl acadvl,LOC107738021,LOC107595296,LOC107731915 coding downstream 153499 13420533 ~ 13436596 (+)
G63666 NA non-coding upstream 59012 13199007 ~ 13199862 (+)
G63696 NA non-coding upstream 123014 13135659 ~ 13135860 (+)
G63685 NA non-coding upstream 139197 13119468 ~ 13119677 (+)
LOC117596991 NA non-coding upstream 331887 12922870 ~ 12926987 (+)
G63547 NA non-coding upstream 424544 12801894 ~ 12834330 (+)
G63889 NA non-coding downstream 120564 13387598 ~ 13387954 (+)
G63901 NA non-coding downstream 150187 13417221 ~ 13417441 (+)
G63898 NA non-coding downstream 192328 13459362 ~ 13467726 (+)
G63936 NA non-coding downstream 237426 13504460 ~ 13504719 (+)
G63976 NA non-coding downstream 302968 13570002 ~ 13572833 (+)
tmem88b tmem88,bcl6b,LOC108267673 other upstream 39015 13206657 ~ 13219859 (+)
si:dkey-112a7.4 LOC108268066 other upstream 963741 12292491 ~ 12295133 (+)
si:ch211-200p22.4 LOC108267499,LOC108434851 other upstream 1553538 11644901 ~ 11705336 (+)
LOC117596972 LOC108267738,LOC108267932,LOC108267931,LOC108267739,LOC108267937,LOC108261673,LOC108267938,LOC108267933,LOC108267935,LOC108267740 other upstream 1653644 11590715 ~ 11605230 (+)
c4h4orf48 c7h4orf48 other upstream 2595463 10657357 ~ 10663411 (+)
slc16a13 slc16a13 other downstream 8428 13275462 ~ 13285834 (+)
G63903 NA other downstream 151343 13418377 ~ 13418696 (+)
LOC113539889 LOC108267838 other downstream 201518 13468552 ~ 13475037 (+)
cited1 cited1 other downstream 291589 13558623 ~ 13562266 (+)
gc2 LOC108267421,LOC108412585 other downstream 438383 13705417 ~ 13719454 (+)

Expression


Co-expression Network