tmem88b (tmem88,bcl6b,LOC108267673)


Basic Information

Item Value
gene id tmem88b
gene name tmem88,bcl6b,LOC108267673
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13206657 ~ 13219859 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU75479
TCTTCCAGCTCATTAGCGTTATCCAGCAGCCTCGTTTAGCTGGTCGTCTGTAGGTTGGAGATTTACTTAAAAccgcttcttttttttctttttttttgcattgagcTATAAACGTTATTATAAACTTGGATTACACGCACGAACTACTAGATGTATATAATTACAGACTCGCATATTtaaaagaggtttttttttcaaaataaaaaggatGCCTCAGTGACATCACCTGCTACTCAAGTGGAATGATTGGGGGTTGTGAGGGCGGGCACAGTCTCTAAAAGGTCAAAGGTTATGTCTGAAATTTGCGTGTGgtcaaaatgattattaatCAAAGACAAGCGAAAATGCAGTATGATTCGTTATAATGGTTTTAACTAAATATTATTAGGCTATATTTTATTGAACAGAATGTTGGAGTGCATTTCACTCTATTTCTATAATCCACACAATTTCATCTCAGAAGCACATTAGGGCTGCAGCAGCAGTGGGGGAATGTAACCCTGGGGTGAGACCAGATGGGAGAGTCAGATAAACAGCTTGAAGACTCAGATATATCAATGTATAAGTCCAAATATCTGGGAGCCAAGGCAGGTGACCCTCTAGACCTTTTGTGGTGGCTCTTCAGCGTCTGCAGGTGACGGAAACGTGTTCCACAGGTGTGACATGGGTACGGCTTCTCCCCAGTGTGGATCAGAACATGGGCACGCAGACGAGTCTTGTTCATCACCTGGACAAATCGAGCACCACAGGTGTCACAgcgatacggcttctctcctgagTGAATGCGGGAGTGGGTCTTCAAATTGGCCGGACGATTAAACTGCGCCCCACACACATTACAGCGATATGGCTTTTCTCCTATAGAAACATACAGGAGAGGCAGTACAGCTTAAGTGAAATACTTGAGAGTTTATATGTGAAAATGTGACAATTATCTTCTGCAAGTTactctggataaaggcatctgctaaatgccatatatgtaaatgtacaagTAAAAGTGTCtttataatattgtattaatTGAGCTTGTCTGGGAAGTAACCACCTTACCTGAGCAGATAGGCTTTGTGCTCCCTTGATTTCCTGAATAACAAATCACTGGGGAGTGATTCTCAAGCTTGACTGGAAGCTTCCCAAAAGGATGGGCATTCTGTTTGGTGCCATCTAACACAGGGGGACATGGGCGCTGATACAGAGAGCAGAGGTCTAGGAGCAAAGATAGGTCCcagaaattgttatttttaaacatgaaccataTATAATCAATACACCCATGACAAAATCCTTTTAAGTTTCAG
>XM_026936249.2
GGCAAGCTGAGGGGCAAGGAAAAGGCATCAGTATATCTCCCCAACTGACCACATACAGCTTTCAATCCACTTTGAGGTGAGGGAGAGGAGAAGCTGAgagattttaatgatttaagagACTGATGCTTTGCTACTTTATATTAGCAAAAGAACCAGGAACTGCATAACTGTATAAGGCTATATACCTGAAACTTCAGCAAGCAGAGCAaaactgaagatttttttttcccaattgcAAATTTATGAAACCACTTTGATCCAAATATTTCCAGTAAGACATTGCAGAAAGGCTTGGCAATTTTTTGGGATTATCTTTAAACACTGGACTATAAACAAGGATTTACTTAAAGAAATCTCTACTGAACAAACCAAAAGAACTAGAAGAGGACAACTACACCCCATACCACACGGTCACCATGAGTATGACTGGCACCCTAGAGGAGGGAGCTCATCACCAGGCACTTGACCTCTCTGAGGAGCTCCCActaaaccaccaccaccagcaggtTCATCTCCAGCACAGCGGCTCCACAGCCTCCATATCTCTAGCTGGGACTCCCATCAGCAGCTCCGGGGTGGTGGTGCCTCCGCCATATTCTGCACCAGTGGCTGGAGGTGGTGAGGCTCCCCTTGAGCTGAGGGGCTCTCTGGACTGTTGGGCATGTTCAGTACTTGTAACAGCCCAGAACCTGGTGATAGCTACTATTAACGTGTTCCTGGCTGCTTTGGTGTTTGGCCTGATCCTCACTCCTGTCATAGTTATGGTGGTGTTTGGATTTATGTGCCACTCCACTGTGCGTCCAAATGATACATCACCCTATTGTTCGGGCCTGCTGAGTGACGGAGGCTGTGTGGCTATGTTAATCATGGGCTTCCTGCTTGTCACTCCACTGCTTGTTCTGGCGTTGGCTGCCTATTGCAGATTGGCTCGTCTCCTGCAGCTCAGCCTCTGTTTCATCCCTTACAGTCGCGCTGTCTACAAAAACCTGCCTGCCACATACCACCACGGCCTGGGAGGAGGCTGCTGTGGACAAGATGCTGGTCAAGACAGAAAGAAGGGAAAAGTGTGGGTATGACACTGGAACTCGATAATGGGTCTCAGTGAATTTGTCATTTGcaatatgtttaattaaaaaactacAACTGTTACAAATGTACATCTCATAGCCATGTGTGGGTCCTCGAAGCgtaaaataaagcaaacatCTAACAAATTCTGTCAAAAGTGAACCAAATTCAGCAACTATTTAGGATGCATTAACTAAAGTGTATGGAAGAAAAGtgtatggaaaaggaaaaatgagGAAGGTATACAAAAAGGATCaacaagaagaaaagaggagTTGATaccttacatactgtataacaaaTAGATCACATATTTTTCTAGTTTATATTCAAATCTACTCATGTACACCAGCACTGTTATATAAACCAGGGTTGTTGCTGAGCTATCAGCAATTTACGAGTTCATACTGAAAGCCAACAAGACTTTTGTAAACTTGTACTTTTATCATGAaaacactggattttttttttctaactaaagctgGACTATTTGTCACTCCATAAATGATagccataaaataaaacattttatatgcaTATGGCCATATTACTCcttctattaaaaatattaatttctgGATAGTGAACTGTCTGATCCTTCCCCTTTGTTTGCACCTGCTATGTGTTTTTATCCTCTACATTCTGTAGCATTGTGATAGGATGTTTTTCTCCTAGACAATGTGTTTCCAGCACTGCAGAAGAATTATCAACAAAGTTTATTATAGTCAGTTCTACTCATTTAGAAAAGCCTTAACCTCAACAGCTGGCATGATATGTTCTGATGTTTGCAGTAAATTGTTTTCATATCTTGAATAGTCCAGCATTCAGATCATTCAGTGTAGTCAtgtatttctatttataaataatctttttttattattatttgtgttctgGAAATCTAATTTAGTTTTGCTATTCattcaaaacataaaaacttttTGACTTACACTCATATATACTAAATAAACCTGTGTAAGttagaaattgttttttaatgccCACATCATGTCTTGGCCCCCCACACTAGTTAACCTGTCTAACTGTGTGCTTGAATGCAGTGTATTTGCATGCCTGAGCTCAAGGTAGGACAAATGAGGGATTAGACTAATACTTGCAATGTTACGTGCTTGTCCATAATTTTAGAAAAAGAATTCTGTGAAGAAATAAAGCTTACCCATTATAAAACCATAGTAGTAGCTTATAAGTGATGGAATCAAAACTACTGTGACCTGTTTGTAAAGTGACCTAGTGGAGCCCTCTATTGTTTCACTCAAAGTACAGCAGTATATTATCATTTTCACCTGGGGGATTATCTTcccttacatacagtatgtgtatataaggaaaattattattatatatattatatatataaactttctAGGGAGCATCAGTGTTTAACCTGTACAGGGATTTGTATAAATGTGAGGGATTTTGTGCGCACGTGGTTACTGCTTGCTtacacaaccatacacacaaTTAGGAACACAACTATTCTTACTAACACGAGCTACAGACCCCCAAGCTCCTAACTTCCTAACATCCTTCAAGCAGTTATaaacaaaaacccacaaaataCTGCTATCTGCAAATTAAGAAGGGTGAAGGAGGAAAGGTTAAATATCAGCTTTGTAATTAGTCATTCAtacttcaataaataaataaataaataaataaaaacatataggCCTACTTTAGCCACACACTCTCTTCCAGCTCATTAGCGTTATCCAGCAGCCTCGTTTAGCTGGTCGTCTGTAGGTTGGAGATTTACT

Function

symbol description
bcl6b Predicted to enable metal ion binding activity. Orthologous to human BCL6B (BCL6B transcription repressor).
tmem88 Predicted to enable PDZ domain binding activity. Involved in negative regulation of canonical Wnt signaling pathway; protein localization to plasma membrane; and protein stabilization. Located in cytosol and plasma membrane.

NR:

description
transmembrane protein 88-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU75479 False 1301 lncRNA 0.42 4 13213977 13219859
XM_026936249.2 True 2843 mRNA 0.39 3 13206657 13214043

Neighbor

gene id symbol gene type direction distance location
kdm6ba kdm6b,LOC106608825 coding upstream 8108 13116216 ~ 13198549 (+)
dnah2 dnah2 coding upstream 91490 12980849 ~ 13115167 (+)
serpinh2 LOC108267141,LOC108412061 coding upstream 230220 12951069 ~ 12976437 (+)
efnb3b efnb3,efnb3b,LOC107597046,LOC106577756 coding upstream 345440 12795941 ~ 12861217 (+)
wrap53 wrap53 coding upstream 418432 12777177 ~ 12788225 (+)
trip6 trip6,LOC103041331 coding downstream 12775 13232634 ~ 13242400 (+)
mettl3 mettl3,LOC107659734,LOC107595277 coding downstream 26126 13245985 ~ 13251814 (+)
agfg2 LOC108267520,LOC108442826 coding downstream 92021 13311880 ~ 13327219 (+)
si:ch73-335l21.1 LOC108267519,LOC105020633 coding downstream 108174 13328033 ~ 13375050 (+)
si:ch73-335l21.2 LOC108268347,LOC108442822 coding downstream 171950 13391809 ~ 13394172 (+)
G63666 NA non-coding upstream 6795 13199007 ~ 13199862 (+)
G63696 NA non-coding upstream 70797 13135659 ~ 13135860 (+)
G63685 NA non-coding upstream 86980 13119468 ~ 13119677 (+)
LOC117596991 NA non-coding upstream 279670 12922870 ~ 12926987 (+)
G63547 NA non-coding upstream 372327 12801894 ~ 12834330 (+)
LOC117597082 NA non-coding downstream 39015 13258874 ~ 13267034 (+)
G63889 NA non-coding downstream 167739 13387598 ~ 13387954 (+)
G63901 NA non-coding downstream 197362 13417221 ~ 13417441 (+)
G63898 NA non-coding downstream 239503 13459362 ~ 13467726 (+)
G63936 NA non-coding downstream 284601 13504460 ~ 13504719 (+)
si:dkey-112a7.4 LOC108268066 other upstream 911524 12292491 ~ 12295133 (+)
si:ch211-200p22.4 LOC108267499,LOC108434851 other upstream 1501321 11644901 ~ 11705336 (+)
LOC117596972 LOC108267738,LOC108267932,LOC108267931,LOC108267739,LOC108267937,LOC108261673,LOC108267938,LOC108267933,LOC108267935,LOC108267740 other upstream 1601427 11590715 ~ 11605230 (+)
c4h4orf48 c7h4orf48 other upstream 2543246 10657357 ~ 10663411 (+)
trnak-cuu_19 NA other upstream 2711187 10495398 ~ 10495470 (+)
slc16a13 slc16a13 other downstream 55603 13275462 ~ 13285834 (+)
G63903 NA other downstream 198518 13418377 ~ 13418696 (+)
LOC113539889 LOC108267838 other downstream 248693 13468552 ~ 13475037 (+)
cited1 cited1 other downstream 338764 13558623 ~ 13562266 (+)
gc2 LOC108267421,LOC108412585 other downstream 485558 13705417 ~ 13719454 (+)

Expression


Co-expression Network