XLOC_005293 (baiap2l1a)


Basic Information

Item Value
gene id XLOC_005293
gene name baiap2l1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 17815725 ~ 17863467 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010165
AATAGCCAAATTCTACAAAGAAAGTAgcaatattgagaaaaaaatcataccgaagaaaaaaaacaccttttgttTGTAGTCTTGTAGTTCAGCTCTGACGTCACGGATCCCACCTTTCCACGTGTGGCATGAGGTCGCGCGGAAAGGTTTCATCCTCTCCTGCATCAGTGCAGTGTCGTGTTTTCTCGGGAGCGCATGAGCGCTCTGTTCTGTGCCGCTTAACAAGCCTTAACAGGTGGGACAAAACGCAGCTTTTAGGATCTGAACGTGGAAAGTTGAAACAAACAAATTGTCACCAAGGACGTTTGAGGAATACCTGCTAAAATGTCTCGAGCCTCGGAGGACGTGAACAAACTCACCGAGAGCACATACAAGAATGTGATGGAACAGTTCAACCCAGGACTGCGGAATCTGGTTAACCTGGGGAAGAACTATGAGAAATCAGTTGCAGCAATGACCTTTGCCGGAAAGGCTTATTTTGATGCACTCTCAAAAATAGGGGAAAGTGCTGCTGTTTCGCCGGTTTCTAGGGAGCTGGGAGTGGTGTTAATGGAGATTTCAGAAGTGCACAAGAACGCCCAATTGGAGATGGAGGAGTCTTTCAAGAGGTTCCACAAAGAGCTCATTGCTGAACTGGAAAAGAAAACTGATATGGATACCAAGTACATGACTGCCACTTTTAAAAGATACCagtcagaacacaaattaaagcAAGACTTCCTGGACAAATCACAGGCTGACCTGAAGAAACTACGAAGAAAAAGTCAAGGGAAACATTCGTCCAAATATGAGATCAAAGAAAATGAGTGCATGGAGACCATCTCATCCCGGCAGACAGACATGCAGAGGTTTATCGCAGATGGATGTAAGGAGGCTTTACTAGAAGAGAAAAGGAGGTTTTGTTTCCTGGTGGACAAACACTGTGCCCTTTCTTATCAACTATCAGCTTTCCATGACAAGGCCAAGGAGATGCTGACCGTCAAACTGCCCAGCTGGCAAGAAAAGTGCAATGATGCCACCAGGGTGCCAGACACAGTGATATCCATGATTGAGGGTCTGCGGACTTCAATGTCAGTCATACCAGAGTCTTCACCTACATTGGAACGCAGTGACAGGACCAATTCCGGTTCAATTGTTCCACCGCCAGCCCCATCACTTAAAGCCCACACGAGCCCACTGGCCAGCATGTTCTCCCAGGAAGCTCCCAAAAGCCCCATCTCATCAGAGCAGTATTCAGATCAGGACAGTCTAGACGAAAACGGCCTGTCTCGGTCTACGTCAGTGTCTAGCGGCATGGACACGGCGAAAAAGACCAGGGTGCAAACTATTTTCCCCCACACAGCAGGGAATAACGAAACGCTGCTGAGCTTTGAGGATGGAGACATCATTATTTTGCTTATCCAGGAAGAGCGGGACGGATGGCTGTACGGAGAACTTGAACATACCGGACAACGGGGATGGTTTCCGTCTTCTTATTGCCGGTCTTACAATGAGACAACGATTCCAAACAGcaGAATGGAGAGCCCGTTTAGTAGCCATATTGATCTTCCAGAGCAACAGGAGGAAGACGAGGAGGTGGAGGAGCCTGTTCTGCAGCCCCCGCCTGACTACAGTGACTCATCCAGGGACAGACCCATCAAGCCCTCCACCCCCTCTTCACAGAGCACGGTGTCTTTGGCAAACGGTCACTCAATGCCTCCTTTCCTTGGGGGTGGGAATCCATTTGCCACGGTCAGGCTACGACCCACAGTCACAAATGACAGATCTGCACCAATCATATGACGAGACTGCATGCAGAAGTCGTGTCTCCAAAGGTTTTGTCTATATCAACACATTGCAGATATGTCAGAAGAACCGAACAAAAGGGTTCTGTTACACATCAGTTTTAATCTTTGAGGTTTTGATAAGTACAAACCAGCTCATTTAAAGAAGGCGTTATTTATGAGAATTTTAGTctttgatttaaattattttaaattgtaactaGATTTGTAGACTAGTTTCCTCGCGAATGCACAGCACCAGACAGGCTTTGTTCTGACCATATTGGTCCCTTTTTTTGGGCCTTGTAAAGGTGATATGAAATGccgaaatgtatattttaattagaAACCAAATCATGTTTCTTTTCCTGAAGAATTCAGTGAAGTAGTGTGAGGTTTGCCAGTTGCCATGTTCAGTCTGTTTTGTCGTACAGTTTTAAAATGCTGATGTATTCCTCATCCTTCACACCCATTGCTTGTTTATAGGTTGACAATGTAAACACACTTAGTTGAATAGTTTATTCCTCGAGTTTGATGTGTGCTGATAACATTTCTATTAACTGCACAGTCAACTGGACATCAACTCAAACTCATGAGCATTCTTCACTATGGACTAGAAATACTTTGGTCTTAAggaaataaatacagatttaattttattttttaagacttGTAAGGTTGTGTACATCTTATGCCTTTCAGCATGTTGTTATATcggaaaaaacattttttatcttttatttttatgttgcaaTATTGATTCATTGCCCAATTTCCACTCGCTCCACATTATTTAGTAATAAAGATATGCATATCTATATGAACATGTATTGAATTTGTATTTCATAATTTACTGTTATTCTGCCAATGCTCTGTTCCATTATCAATATTTTGTCAGTAGttgcattgttattatttttcttgttaGCAGAATAAAAGTGAAGAACTTGAACTgtgtgttattgttttgtttttatatttttttaacacgCTTCGTTCATCTCATTCACTAAAAATGTTGTGTTGGCCAACAAATGATGTCAGTGATTGATCCGTATGACATTTATTGTGTCCAAAGCAATGttcttgctttgttttttatgatggctataaatctgtcataaatgGGGTTATATGAGGTGTTTGTATGCTGCATGTTGTAAAAGGGGA

Function

symbol description
baiap2l1a Predicted to enable kinase activity. Predicted to be involved in actin filament organization and positive regulation of cytoskeleton organization. Predicted to act upstream of or within several processes, including plasma membrane organization; regulation of actin filament polymerization; and regulation of insulin receptor signaling pathway. Predicted to be active in cytosol and nucleoplasm. Is expressed in several structures, including EVL; central nervous system; digestive system; periderm; and pronephric duct. Orthologous to human BAIAP2L1 (BAR/IMD domain containing adaptor protein 2 like 1).

GO:

id name namespace
GO:0051764 actin crosslink formation biological_process
GO:2000251 positive regulation of actin cytoskeleton reorganization biological_process
GO:0007009 plasma membrane organization biological_process
GO:0051017 actin filament bundle assembly biological_process
GO:0030838 positive regulation of actin filament polymerization biological_process
GO:0016310 phosphorylation biological_process
GO:0005829 cytosol cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031201-1 Predicted to enable kinase activity. Predicted to be involved in actin filament organization and positive regulation of cytoskeleton organization. Predicted to act upstream of or within several processes, including plasma membrane organization; regulation of actin filament polymerization; and regulation of insulin receptor signaling pathway. Predicted to be active in cytosol and nucleoplasm. Is expressed in several structures, including EVL; central nervous system; digestive system; periderm; and pronephric duct. Orthologous to human BAIAP2L1 (BAR/IMD domain containing adaptor protein 2 like 1).

Ensembl:

ensembl_id ENSDARG00000029305

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010165 True 2933 mRNA 0.42 14 17815725 17863467

Neighbor

gene id symbol gene type direction distance location
XLOC_005292 tecpr1a coding downstream 5182 17794284 ~ 17810543 (-)
XLOC_005291 NA coding downstream 88185 17721801 ~ 17727540 (-)
XLOC_005290 pvalb2 coding downstream 103227 17710425 ~ 17712498 (-)
XLOC_005288 pvalb3 coding downstream 108208 17705218 ~ 17707517 (-)
XLOC_005289 dre-mir-2192 coding downstream 108824 17706792 ~ 17706901 (-)
XLOC_005294 nptx2b coding upstream 25998 17889465 ~ 17897134 (-)
XLOC_005295 NA coding upstream 361067 18224534 ~ 18227730 (-)
XLOC_005296 tom1l2 coding upstream 518515 18381982 ~ 18408588 (-)
XLOC_005297 atpaf2 coding upstream 547141 18410608 ~ 18414539 (-)
XLOC_005298 NA coding upstream 589740 18453207 ~ 18454407 (-)
XLOC_005275 BX000534.1 non-coding downstream 817283 16997206 ~ 16998442 (-)
XLOC_005273 NA non-coding downstream 848917 16964656 ~ 16966808 (-)
XLOC_005272 NA non-coding downstream 872477 16942204 ~ 16943248 (-)
XLOC_005303 AL772266.1 non-coding upstream 874946 18738413 ~ 18738529 (-)
XLOC_005318 NA non-coding upstream 2193504 20056971 ~ 20120711 (-)
XLOC_005319 CR352324.1 non-coding upstream 2325702 20189169 ~ 20189286 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_01200458_01207989 NA coding CI01000063 null 1200388 ~ 1207989 (-)