G63889


Basic Information

Item Value
gene id G63889
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13387598 ~ 13387954 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU75666
AACAGAGTCCgtcattcattttcaaacaGAATCAGATAGCAGACTGCAGATGGCATACAGGAGTGGAAGGGAAAGGCCCTCTTTTTATGAGCTCATTATTGGCTATGTCCCAATTATCGCTGTTTCCTGTATAAAGTTATATTGTTCATTTGCTTTGAGGGAAAACATGTTCTTACATGGTGGTATTACTGAATGTTCTTTGCTTAATAGGACATTGGTgatatgctattttttttaaatcagcatgTTCTCAGTTAGCTGCTAATAAAATTCTACAAATTAGGGACAGAGCTTCTCATGTTGACTTTagattttcaatttattttggtCTAGGACCAGATTACACAAGCCTTCTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU75666 True 357 lncRNA 0.36 1 13387598 13387954

Neighbor

gene id symbol gene type direction distance location
si:ch73-335l21.1 LOC108267519,LOC105020633 coding upstream 12548 13328033 ~ 13375050 (+)
agfg2 LOC108267520,LOC108442826 coding upstream 60379 13311880 ~ 13327219 (+)
mettl3 mettl3,LOC107659734,LOC107595277 coding upstream 135784 13245985 ~ 13251814 (+)
trip6 trip6,LOC103041331 coding upstream 145198 13232634 ~ 13242400 (+)
kdm6ba kdm6b,LOC106608825 coding upstream 189049 13116216 ~ 13198549 (+)
si:ch73-335l21.2 LOC108268347,LOC108442822 coding downstream 3855 13391809 ~ 13394172 (+)
dvl2 dvl2 coding downstream 11481 13399435 ~ 13416861 (+)
acadvl acadvl,LOC107738021,LOC107595296,LOC107731915 coding downstream 32579 13420533 ~ 13436596 (+)
LOC113540489 ponzr1,LOC108267839,LOC108442818 coding downstream 55840 13443794 ~ 13450823 (+)
si:dkey-33c9.6 LOC108267836 coding downstream 98582 13486536 ~ 13500833 (+)
LOC117597082 NA non-coding upstream 120564 13258874 ~ 13267034 (+)
G63666 NA non-coding upstream 187736 13199007 ~ 13199862 (+)
G63696 NA non-coding upstream 251738 13135659 ~ 13135860 (+)
G63685 NA non-coding upstream 267921 13119468 ~ 13119677 (+)
LOC117596991 NA non-coding upstream 460611 12922870 ~ 12926987 (+)
G63901 NA non-coding downstream 29267 13417221 ~ 13417441 (+)
G63898 NA non-coding downstream 71408 13459362 ~ 13467726 (+)
G63936 NA non-coding downstream 116506 13504460 ~ 13504719 (+)
G63976 NA non-coding downstream 182048 13570002 ~ 13572833 (+)
G63973 NA non-coding downstream 307695 13695649 ~ 13748072 (+)
slc16a13 slc16a13 other upstream 101764 13275462 ~ 13285834 (+)
tmem88b tmem88,bcl6b,LOC108267673 other upstream 167739 13206657 ~ 13219859 (+)
si:dkey-112a7.4 LOC108268066 other upstream 1092465 12292491 ~ 12295133 (+)
si:ch211-200p22.4 LOC108267499,LOC108434851 other upstream 1682262 11644901 ~ 11705336 (+)
LOC117596972 LOC108267738,LOC108267932,LOC108267931,LOC108267739,LOC108267937,LOC108261673,LOC108267938,LOC108267933,LOC108267935,LOC108267740 other upstream 1782368 11590715 ~ 11605230 (+)
G63903 NA other downstream 30423 13418377 ~ 13418696 (+)
LOC113539889 LOC108267838 other downstream 80598 13468552 ~ 13475037 (+)
cited1 cited1 other downstream 170669 13558623 ~ 13562266 (+)
gc2 LOC108267421,LOC108412585 other downstream 317463 13705417 ~ 13719454 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other downstream 867790 14255744 ~ 14269340 (+)

Expression


Co-expression Network