G63898


Basic Information

Item Value
gene id G63898
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13459362 ~ 13467726 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU75682
cacaaaagaaactctgagtctcatccacaACATCTTCCAAGAGTCTCATCCTATCCATCCTTGAGAGagtccaacacatctttggagtctcatccaacacacctctgcaagagtctcatccaatccatcttccaagagtctcatccactacatctctgcaagagtctccatccacatctgaaggaagtctcatcaaccaagagctttagaagttcatcacaaggagatcacgcttgctccgagactgcatccagactggttcttgcaaagcctccaactctcgccttcgcaccgctgtgaaccattcttcaaagttttgcaacccgcctatgagactccgccgggttcgcgcctcactctgtttatcttcctcattggtctttcgagacgctacataaggccaaccagaccgccgaccaatcaacatcgccggaaacgccacgagggaatccctggcaacacaaacgcaaGTGGAGAGATATGCTGATCTAAGGCAGcacggtggtgcagcaggtggtattgctgcctcacagctctttCTGTTTGGagtgtctgtgcatgttctccccagtTATGGCAGTTCAACAGCAGGTTACCACAGTGGTGTCGCACACAGGATATAGTTCTGGCACATGGACCACACGCATCTGTGACTGCTGCTCTGATATGAGCACTTggCTCATGCTGTGATGACTGCTGTACTGTGTGTTTCTGCTACACCTGTGCCTGGTGCCAAATGGCACGTGAAATTAAGATTCGTGCTCGAGCTGGCACTCGTGCCACTGTGATCACTCAGCAGGTTATAGGCTAGCTGATCCTTTGCTGCTTCAAAGTTCAAATGTTAAATCTCAGCATTTACAATTTAATCACTTCAGTGCATATTGTTCACCTTTATTTCACACTGTTCACCTTAAGTTCTGATCACACGATGACAAAagtgaatataaatatacatttctgtTATATTAACCAGTCTTAATGACTTTTGAATATTGCTTTAGCTTTGCAACAATGTTTGTTCCCCTTGCAACAATTTGATAAATAAACCATATAGCTGCTGTTAAAGCCTTTAAGCCTTGTTTTTATTGGTTTACTATCTAATTACGAACGTTGTTAATCTCAGTGATAGAAAGATTCAAACCTTCTCTCCGTAATTTTTTTCTGGGGATTCTGTGTAGCAGAAAGCAgcatgtttgttgtttttaaaggaGTGTTTTACATCACAGGACATGAAAATTGGTTGTGTTAGCAGGTGTGAAAAGTTttactgatttacattttacatttacatcgcTCAGAGGTGGGTAGAGTATCCAAAATCTGTacttaagtaaaagtacaagtacttatggaaatatttactcaagtaaaagtaacaATCTTAATAGTTACTTGAGTAAGAGTACAAAAGTATCTGATGAAAAAACTACTCAGGTAGCTAGTTACTAGTTACTTCAGATCTGATTGATATGAAGCGAAAACCCTGAATTTCAAACTACTTGGAGAGCTTTCACACACCTCTCCTTGAAAGTCTCTTTGTTCTACTTATATAAAACCTAGGTTGAAGTAAAATAGCCTATCTCAGTCCTGTGATGGGCACATTAACATCACATAACCTGTCATTTGCAATAAAATCTCAAAC

Function

NR:

description
PREDICTED: cytochrome b5-like

GO: NA

KEGG:

id description
ko05110 Vibrio cholerae infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU75682 True 1642 lncRNA 0.42 4 13459362 13467726

Neighbor

gene id symbol gene type direction distance location
LOC113540489 ponzr1,LOC108267839,LOC108442818 coding upstream 8539 13443794 ~ 13450823 (+)
acadvl acadvl,LOC107738021,LOC107595296,LOC107731915 coding upstream 22766 13420533 ~ 13436596 (+)
dvl2 dvl2 coding upstream 42501 13399435 ~ 13416861 (+)
si:ch73-335l21.2 LOC108268347,LOC108442822 coding upstream 65190 13391809 ~ 13394172 (+)
si:ch73-335l21.1 LOC108267519,LOC105020633 coding upstream 84312 13328033 ~ 13375050 (+)
si:dkey-33c9.6 LOC108267836 coding downstream 18810 13486536 ~ 13500833 (+)
hdac8 hdac8,LOC107707919,LOC107711573,LOC107695331 coding downstream 66091 13533817 ~ 13553948 (+)
rps4x rps4x,LOC103480264,LOC107373838 coding downstream 97002 13564728 ~ 13569599 (+)
nhsl2 nhsl2 coding downstream 105908 13573634 ~ 13645984 (+)
arhgap36 LOC108267422,LOC108412584,LOC107702308,LOC107596505 coding downstream 179455 13647181 ~ 13684599 (+)
G63901 NA non-coding upstream 41921 13417221 ~ 13417441 (+)
G63889 NA non-coding upstream 71408 13387598 ~ 13387954 (+)
LOC117597082 NA non-coding upstream 192328 13258874 ~ 13267034 (+)
G63666 NA non-coding upstream 259500 13199007 ~ 13199862 (+)
G63696 NA non-coding upstream 323502 13135659 ~ 13135860 (+)
G63936 NA non-coding downstream 36734 13504460 ~ 13504719 (+)
G63976 NA non-coding downstream 102276 13570002 ~ 13572833 (+)
G63973 NA non-coding downstream 227923 13695649 ~ 13748072 (+)
G64025 NA non-coding downstream 287818 13755544 ~ 13759751 (+)
G64049 NA non-coding downstream 435715 13903441 ~ 13909459 (+)
G63903 NA other upstream 40666 13418377 ~ 13418696 (+)
slc16a13 slc16a13 other upstream 173528 13275462 ~ 13285834 (+)
tmem88b tmem88,bcl6b,LOC108267673 other upstream 239503 13206657 ~ 13219859 (+)
si:dkey-112a7.4 LOC108268066 other upstream 1164229 12292491 ~ 12295133 (+)
si:ch211-200p22.4 LOC108267499,LOC108434851 other upstream 1754026 11644901 ~ 11705336 (+)
LOC113539889 LOC108267838 other downstream 826 13468552 ~ 13475037 (+)
cited1 cited1 other downstream 90897 13558623 ~ 13562266 (+)
gc2 LOC108267421,LOC108412585 other downstream 237691 13705417 ~ 13719454 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other downstream 788018 14255744 ~ 14269340 (+)
zgc:194930 LOC108268002 other downstream 1164304 14632030 ~ 14658936 (+)

Expression


Co-expression Network