LOC113539889 (LOC108267838)


Basic Information

Item Value
gene id LOC113539889
gene name LOC108267838
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13468552 ~ 13475037 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU75730
ATTTCACTGAGGGCTGTGCTTAACTGATGCTCTTAAATATTGCCATCCTGTGTTCTACAAGGAACATAATCCAGTGACTGATACCTGGGTTCATTCTAAGCCAACAGAGCATCCGCACAGGCTAAATCCCACACTGAACAGTGAAAACGTCATGGCGGTCCAGCAGCAGATTACCACAGTGACAACACGCACAACCTGCAGTTCAGGCACCTGGAGCACAGGCCTCTTTGACTGCACATCTGACATGAAAACCTGTTGCTGTGCCCTGTGGTGTTTGCCATGTATGCAGTGTCAGACTGCTTCTGATTTTGGTTGGTGTTTCTGCATGCCCCTGCTGGACTGCTGTCTGACTGTCTCCTGCTGCCTTCGCAGCAAAATGAGGGAGCGCTATAATATTAAAgGCTCCAGCATTGAAGACTGCTTCACTGTGCTTTGCTGTTACGCCTGTGCCTGGTGCCAGATGGCACGTGAGTTGAAGACCCGTGGCTAGACAGATTTTTGTGGAAATTGCCCTTTTGCTTTTTTGAAGTTTCAAAATTTCAAATCTTCAAAGCTTGTGACTAAAAAGGGCttgtgattaaaaatgtgcatCAGTGTATAGCACATTGCTTGTTTTCTACTTTGACCATGACTTGCTATAACCATGTTCCAAATATCCcttttttatacaatattagCCTATATTAGTAACcccttttaatttcatttcataatttcatcAGACTTACTGATCACCATATACTTTCCAAAAAGAAAATTTTGTTGGGATTATCTGGTGTACCTTTGCATGTTATTCTTAATGatttaataaagcaaataaagacTTGTTTATACTGCTGGta
>XM_026935990.2
ATACTATAATGAGGGGATGGTGATAGGAATTAGAATGGGAGCTATGAAAATATAGTTAAATGTCAAggaatttttttcagtaattattTTGTGTTCAGTGTAGGCTTAGTGCTCATGTAAGGGCTGAGTGAAAACTTGAAGACTCACTTTTCAGTCAGCTTGGAGTCTCTTCCTGGTGCCAGTACAGAGAGTcatgatgcaggtcttccttatGTTTTGAAGGATGGAACATAATCCAGTGACTGATACCTGGGTTCATTCTAAGCCAACAGAGCATCCGCACAGGCTAAATCCCACACTGAACAGTGAAAACGTCATGGCGGTCCAGCAGCAGATTACCACAGTGACAACACGCACAACCTGCAGTTCAGGCACCTGGAGCACAGGCCTCTTTGACTGCACATCTGACATGAAAACCTGTTGCTGTGCCCTGTGGTGTTTGCCATGTATGCAGTGTCAGACTGCTTCTGATTTTGGTTGGTGTTTCTGCATGCCCCTGCTGGACTGCTGTCTGACTGTCTCCTGCTGCCTTCGCAGCAAAATGAGGGAGCGCTATAATATTAAAgGCTCCAGCATTGAAGACTGCTTCACTGTGCTTTGCTGTTACGCCTGTGCCTGGTGCCAGATGGCACGTGAGTTGAAGACCCGTGGCTAGACAGATTTTTGTGGAAATTGCCCTTTTGCTTTTTTGAAGTTTCAAAATTTCAAATCTTCAAAGCTTGTGACTAAAAAGGGCttgtgattaaaaatgtgcatCAGTGTATAGCACATTGCTTGTTTTCTACTTTGACCATGACTTGCTATAACCATGTTCCAAATATCCcttttttatacaatattagCCTATATTAGTAACcccttttaatttcatttcataatttcatcAGACTTACTGATCACCATATACTTTCCAAAAAGAAAATTTTGTTGGGATTATCTGGTGTACCTTTGCATGTTATTCTTAATGatttaataaagcaaataaagacTTGTTTATACTGCTGGta
>XM_034303788.1
GGGATTTCATCATCTATGGAACATAATCCAGTGACTGATACCTGGGTTCATTCTAAGCCAACAGAGCATCCGCACAGGCTAAATCCCACACTGAACAGTGAAAACGTCATGGCGGTCCAGCAGCAGATTACCACAGTGACAACACGCACAACCTGCAGTTCAGGCACCTGGAGCACAGGCCTCTTTGACTGCACATCTGACATGAAAACCTGTTGCTGTGCCCTGTGGTGTTTGCCATGTATGCAGTGTCAGACTGCTTCTGATTTTGGTTGGTGTTTCTGCATGCCCCTGCTGGACTGCTGTCTGACTGTCTCCTGCTGCCTTCGCAGCAAAATGAGGGAGCGCTATAATATTAAAgGCTCCAGCATTGAAGACTGCTTCACTGTGCTTTGCTGTTACGCCTGTGCCTGGTGCCAGATGGCACGTGAGTTGAAGACCCGTGGCTAGACAGATTTTTGTGGAAATTGCCCTTTTGCTTTTTTGAAGTTTCAAAATTTCAAATCTTCAAAGCTTGTGACTAAAAAGGGCttgtgattaaaaatgtgcatCAGTGTATAGCACATTGCTTGTTTTCTACTTTGACCATGACTTGCTATAACCATGTTCCAAATATCCcttttttatacaatattagCCTATATTAGTAACcccttttaatttcatttcataatttcatcAGACTTACTGATCACCATATACTTTCCAAAAAGAAAATTTTGTTGGGATTATCTGGTGTACCTTTGCATGTTATTCTTAATGatttaataaagcaaataaagacTTGTTTATACTGCTGGta
>XM_034303789.1
GCCTAGGGTCTAATTATACTATAATGAGGGGATGGTGATAGGAATTAGAATGGGAGCTATGAAAATATAGTTAAATGTCAAggaatttttttcagtaattattTTGTGTTCAGTGTAGGCTTAGTGCTCATGTAAGGGCTGAGTGAAAACTTGAAGACTCACTTTTCAGTCAGCTTGGAGTCTCTTCCTGGTGCCAGTACAGAGAGTcatgatgcaggtcttccttatGTTTTGAAGGATGTCATGGCGGTCCAGCAGCAGATTACCACAGTGACAACACGCACAACCTGCAGTTCAGGCACCTGGAGCACAGGCCTCTTTGACTGCACATCTGACATGAAAACCTGTTGCTGTGCCCTGTGGTGTTTGCCATGTATGCAGTGTCAGACTGCTTCTGATTTTGGTTGGTGTTTCTGCATGCCCCTGCTGGACTGCTGTCTGACTGTCTCCTGCTGCCTTCGCAGCAAAATGAGGGAGCGCTATAATATTAAAgGCTCCAGCATTGAAGACTGCTTCACTGTGCTTTGCTGTTACGCCTGTGCCTGGTGCCAGATGGCACGTGAGTTGAAGACCCGTGGCTAGACAGATTTTTGTGGAAATTGCCCTTTTGCTTTTTTGAAGTTTCAAAATTTCAAATCTTCAAAGCTTGTGACTAAAAAGGGCttgtgattaaaaatgtgcatCAGTGTATAGCACATTGCTTGTTTTCTACTTTGACCATGACTTGCTATAACCATGTTCCAAATATCCcttttttatacaatattagCCTATATTAGTAACcccttttaatttcatttcataatttcatcAGACTTACTGATCACCATATACTTTCCAAAAAGAAAATTTTGTTGGGATTATCTGGTGTACCTTTGCATGTTATTCTTAATGatttaataaagcaaataaagacTTGTTTATACTGCTGGta

Function

NR:

description
PREDICTED: cornifelin homolog A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU75730 False 842 TUCP 0.42 4 13470769 13475037
XM_026935990.2 True 1007 mRNA 0.41 5 13468567 13475037
XM_034303788.1 False 799 mRNA 0.42 5 13469819 13475037
XM_034303789.1 False 934 mRNA 0.41 4 13468552 13475037

Neighbor

gene id symbol gene type direction distance location
LOC113540489 ponzr1,LOC108267839,LOC108442818 coding upstream 17729 13443794 ~ 13450823 (+)
acadvl acadvl,LOC107738021,LOC107595296,LOC107731915 coding upstream 31956 13420533 ~ 13436596 (+)
dvl2 dvl2 coding upstream 51691 13399435 ~ 13416861 (+)
si:ch73-335l21.2 LOC108268347,LOC108442822 coding upstream 74380 13391809 ~ 13394172 (+)
si:ch73-335l21.1 LOC108267519,LOC105020633 coding upstream 93502 13328033 ~ 13375050 (+)
si:dkey-33c9.6 LOC108267836 coding downstream 11499 13486536 ~ 13500833 (+)
hdac8 hdac8,LOC107707919,LOC107711573,LOC107695331 coding downstream 58780 13533817 ~ 13553948 (+)
rps4x rps4x,LOC103480264,LOC107373838 coding downstream 89691 13564728 ~ 13569599 (+)
nhsl2 nhsl2 coding downstream 98597 13573634 ~ 13645984 (+)
arhgap36 LOC108267422,LOC108412584,LOC107702308,LOC107596505 coding downstream 172144 13647181 ~ 13684599 (+)
G63898 NA non-coding upstream 826 13459362 ~ 13467726 (+)
G63901 NA non-coding upstream 51111 13417221 ~ 13417441 (+)
G63889 NA non-coding upstream 80598 13387598 ~ 13387954 (+)
LOC117597082 NA non-coding upstream 201518 13258874 ~ 13267034 (+)
G63666 NA non-coding upstream 268690 13199007 ~ 13199862 (+)
G63936 NA non-coding downstream 29423 13504460 ~ 13504719 (+)
G63976 NA non-coding downstream 94965 13570002 ~ 13572833 (+)
G63973 NA non-coding downstream 220612 13695649 ~ 13748072 (+)
G64025 NA non-coding downstream 280507 13755544 ~ 13759751 (+)
G64049 NA non-coding downstream 428404 13903441 ~ 13909459 (+)
G63903 NA other upstream 49856 13418377 ~ 13418696 (+)
slc16a13 slc16a13 other upstream 182718 13275462 ~ 13285834 (+)
tmem88b tmem88,bcl6b,LOC108267673 other upstream 248693 13206657 ~ 13219859 (+)
si:dkey-112a7.4 LOC108268066 other upstream 1173419 12292491 ~ 12295133 (+)
si:ch211-200p22.4 LOC108267499,LOC108434851 other upstream 1763216 11644901 ~ 11705336 (+)
cited1 cited1 other downstream 83586 13558623 ~ 13562266 (+)
gc2 LOC108267421,LOC108412585 other downstream 230380 13705417 ~ 13719454 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other downstream 780707 14255744 ~ 14269340 (+)
zgc:194930 LOC108268002 other downstream 1156993 14632030 ~ 14658936 (+)
LOC113540079 sh3tc1 other downstream 2548157 16023194 ~ 16039984 (+)

Expression


Co-expression Network