G63973


Basic Information

Item Value
gene id G63973
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13695649 ~ 13748072 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU75783
aaaaaaaaaaaaaaaaaaaaaaaaagacccATCCAGGGCATACTCCTGCCTTGTACCTCATGTTTCCCAAGATTAACTGCGACTCTGACTATGATAAAGCACTTACAGAAGATGAGTGATTAACGTGATGTGTATTTCAGTGGGTGCCTGGTGTGGGGGAAGGGTGCTCCCAAAAATCAAGTCCACTCTTTGTCAGTAGTTTGTAAATGCAATGGATGATGAGGAAGTTAAATTGTATGACATAATACACAGCCAATTCAAGCTTaggtgtctatatatatatattcatatttatataaaatactgtTTCATTAAAAGAATGTTTACTTTGTACAAATATTGTGTAAGTGAAAAGGTGAGATAGAATATGAAAGAGTGATTGATGGAGTGAGAGAATGAACACGTGCCAAAGAGTCgaaaaaattaattgtaaagTACCGTTTAAGGTTTTAGACTAAAAAGGCGttttacacaatatacacattttattacttacaaAATAGATAAAAGGCTTGTAGTTATAAATTCTTGGATACAGCAGTGTTAGTACCATCAAGAagtgggagaaagaaaagagtgatgaaaaaaataaagcattaaaaaatgCAGTCTCGCTAATGTAACTATTCAGTGCATTTTTCTCATTGATGTTCAAAGTGCCGATTTGGTAACATGGAGAGAATTTCAGTACTTTGCGAAAACTTCTCTCTAAAAATGTGGTGTTTGCATACCAACCACAATTCTATGAGAAAgaaatttcttttaaagaaaacaaaaaaaaaggagggaaaaaatgcacttttttgtcACTGATCCATCATGGCACCTTTGTtgatgtttctgtctctgtatgaggtacttctttaaaaaagtaaagacTAGtaattttttcagttttttgcTGTGTTGCACAGTAGCACCATAGAGTTGAACTTGAAGATAATGCACCACTAGAATTCCACTTGTTCTCGATGTAACTGTTGCAGTCGCTGTGGTGATCACCCCTGATAAGGGGTCATGCTGTATTCAGCATTGCTATGTTACGTCCTCTTCATACACACAATACAGCGACTCACGCGTGTCTGGAGATTCCCTGCTTTCAGCGTCTCAGATTGTGGCT
>TU75785
aaaaaaaaaaaaaaaaaaaaaaaaagacccATCCAGGGCATACTCCTGCCTTGTACCTCATGTTTCCCAAGATTAACTGCGACTCTGACTATGATAAAGCACTTACAGAAGATGAGTGATTAACGTGATGTGTATTTCAGTGGGTGCCTGGTGTGGGGGAAGGGTGCTCCCAAAAATCAAGTCCACTCTTTGTCAGTAGTTTGTAAATGCAATGGATGATGAGGAAGTTAAATTGTATGACATAATACACAGCCAATTCAAGCTTaggtgtctatatatatatatatatattcatatttatataaaatactgtTTCATTAAAAGAATGTTTACTTTGTACAAATATTGTGTAAGTGAAAAGGTGAGATAGAATATGAAAGAGTGATTGATGGAGTGAGAGAATGAACACGTGCCAAAGAGTCgaaaaaattaattgtaaagTACCGTTTAAGGTTTTAGACTAAAAAGGCGttttacacaatatacacattttattacttacaaAATAGATAAAAGGCTTGTAGTTATAAATTCTTGGATACAGCAGTGTTAGTACCATCAAGAagtgggagaaagaaaagagtgatgaaaaaaataaagcattaaaaaatgCAGTCTCGCTAATGTAACTATTCAGTGCATTTTTCTCATTGATGTTCAAAGTGCCGATTTGGTAACATGGAGAGAATTTCAGTACTTTGCGAAAACTTCTCTCTAAAAATGTGGTGTTTGCATACCAACCACAATTCTATGAGAAAgaaatttcttttaaagaaaacaaaaaaaaaggagggaaaaaatgcacttttttgtcACTGATCCATCATGGCACCTTTGTtgatgtttctgtctctgtatgaggtacttctttaaaaaagtaaagacTAGtaattttttcagttttttgcTGTGTTGCACAGTAGCACCATAGAGTTGAACTTGAAGATAATGCACCACTAGAATTCCACTTGTTCTCGATGTAACTGTTGCAGTCGCTGTGGTGATCACCCCTGATAAGGGGTCATGCTGTATTCAGCATTGCTATGTTACGTCCTCTTCATACACACAATACAGCGACTCACGCGTGTCTGGAGATTCCCTGCTTTCAGCGTCTCAGATTGTGGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU75783 False 1120 lncRNA 0.36 3 13695649 13748072
TU75785 True 1126 lncRNA 0.35 3 13695649 13748072

Neighbor

gene id symbol gene type direction distance location
arhgap36 LOC108267422,LOC108412584,LOC107702308,LOC107596505 coding upstream 11050 13647181 ~ 13684599 (+)
nhsl2 nhsl2 coding upstream 49665 13573634 ~ 13645984 (+)
rps4x rps4x,LOC103480264,LOC107373838 coding upstream 126050 13564728 ~ 13569599 (+)
hdac8 hdac8,LOC107707919,LOC107711573,LOC107695331 coding upstream 141701 13533817 ~ 13553948 (+)
si:dkey-33c9.6 LOC108267836 coding upstream 194816 13486536 ~ 13500833 (+)
col4a6 col4a6,LOC108267418 coding downstream 50108 13798180 ~ 13880674 (+)
ankrd46b ankrd46,ankrd46b,LOC108428588 coding downstream 134240 13882312 ~ 13889584 (+)
LOC113539767 t185a,tmem185a coding downstream 143041 13891113 ~ 13898505 (+)
m1ap m1ap coding downstream 225924 13973996 ~ 14016125 (+)
nagk nagk,LOC107697250 coding downstream 287135 14035207 ~ 14039607 (+)
G63976 NA non-coding upstream 122816 13570002 ~ 13572833 (+)
G63936 NA non-coding upstream 190930 13504460 ~ 13504719 (+)
G63898 NA non-coding upstream 227923 13459362 ~ 13467726 (+)
G63901 NA non-coding upstream 278208 13417221 ~ 13417441 (+)
G63889 NA non-coding upstream 307695 13387598 ~ 13387954 (+)
G64025 NA non-coding downstream 7472 13755544 ~ 13759751 (+)
G64049 NA non-coding downstream 155369 13903441 ~ 13909459 (+)
G64102 NA non-coding downstream 264026 14012098 ~ 14012315 (+)
G64103 NA non-coding downstream 265147 14013219 ~ 14013418 (+)
G64105 NA non-coding downstream 269214 14017286 ~ 14017669 (+)
cited1 cited1 other upstream 133383 13558623 ~ 13562266 (+)
LOC113539889 LOC108267838 other upstream 220612 13468552 ~ 13475037 (+)
G63903 NA other upstream 276953 13418377 ~ 13418696 (+)
slc16a13 slc16a13 other upstream 409815 13275462 ~ 13285834 (+)
tmem88b tmem88,bcl6b,LOC108267673 other upstream 475790 13206657 ~ 13219859 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other downstream 507672 14255744 ~ 14269340 (+)
zgc:194930 LOC108268002 other downstream 883958 14632030 ~ 14658936 (+)
LOC113540079 sh3tc1 other downstream 2275122 16023194 ~ 16039984 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other downstream 2562141 16310213 ~ 16319166 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other downstream 2619884 16367956 ~ 16370957 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_035089 NA non-coding NC_007118.7 CM002891.2 51193155 ~ 51195855 (-)