G63976


Basic Information

Item Value
gene id G63976
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13570002 ~ 13572833 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU75791
aaagatttaaaaataagtgtCAATTGTCAATAACAGTAAATATGTGAaaccatttaaataattaaaatttaactAGTTTTGTAACTGATTTTCTAAATAGTTTGGGAATTGCTGTATGTCTCGGGCCAGGAGTCCCCACGGGAAACTTAACAGATTCcttcatgtttaataatgtcCTAGTGGAAGTTAATCCACCACTtagttaattttaataatctccTTGTTGAAGGAGCTGATTGACATTACTTGACTTTGCAGCGAATGCAAGATGTGTGCACAACAGCAAACCATAGCTAGACTTAGGGTTGGTGTAGTACTCGTTAGAACTGTTTAGTAGTGGCTAAAATGATCACTTAAATTACTAAACCTGTCCAACATGTGAAGTCGGTAAACTGTAAGTCTAAATGAAAAGTCATGCAGAATGGATTTATAATCTATTTCTCAAATACAAACAGAATTAGACTGTCACGGAATATATACAGATTTACAGTATAAACCAAATAGACCAGCAGTACAATGTATAAGGAGCTTGTGCTTTAATATGGCaataaaagtcaaaaaaaaaaaatcattgttgaCAATATTAAAATTAGGAGGCCAAAAGTCATGTTTCACCTTTAATGAAAACAGTTGTACTGCTATAGTGCTACAAACACCTATACAAATCAGAGACTTGCAAGTTGAAAGTTAAATTGCAATCACATCACTTTACAATGAAAACAATAGTATTGTAATGGGTCACCATGACACTCCAAAAGGTAGTGAGCACATCTGGAGAAATGTAAATTGTGTTAAATGTGCTCAGGAGAGCTGCATCACCTTGAAAGCTGTAATGTGAGCTAAAGTAAATGAAGCTCAgccttgtcttgtttttttagACATAATAGCtcatacacagatcagccataacattaaaaccacctgcctaatattgtgtaggtcccccttgtactgccaaaacagctctgatccatcAAGTCAtggacctctgaaggtgtgctgtggtatctggcatcaagatgttagcagcagctcctttaagtcctgtaagttgtgaggtggggtctccgtggattggacttgtttgtcctgCACGTCCCACAGgcgctcgattggattgagatctggggaatttggagccCAAGTCAACACCTGGAACTCTGTcattttcctcaaaccattcctgaacaatttttgcagtgtggcagggtgcattatcctgctgaaagagaccactgccattagggaataacgttgccatgaagaggtgtactATATCTGCTATGATGTTTAGGTAGttggtacgtgtcaaaataacatccacatgaataccaGGACTCAAAGTCTCCCAGCAGAAaacccacaagacctgctgttttggagatgctctgacccattCATCTAgctatcacaatttggcccttgtcaaagtcacttagatccttacgcttgcccatttttcctgcttccaacacatcaacttcgagaataGACTGTTCACtcgctgcctaatatatcccaccccttgacaggtgccactgtaatgagataatcaatttCACCTGccagtagttttaatgttaatggCTGATGGGTGTATGTGCTGGTGTTATCATGTTCAGTTGCTCACAGACTGTAGTGATTGAGGCTGAGTAGGGCCTAGTGAGTGGCTGCTTCCCAATAACCCTGATGCCTCTTTGAATCCTCAGCTCCTCAATCCTACATCCCTCAGCATGTGGCCCAGAAATGCAGATttgttacatcatcaataagtGAAGTTGCTTTAGAATGTTGCTCCAGTGAGCAAGGCAGATATGTTTGTCCTGGATTCTTCCTGTCCCTATTTCATTTCCTCAGAGCAAGGAGCTAAGAAGTGTGGAAGTGACACAAGGTaagggaaataaaatgaatgagatGCACATAGAGACTCCATTTAAAGGTGATGTTCTACTGGAACTTGACGTGAGCCGCTGAAGACCCACAGAGATGAAGAGGGACACTGATGTTTTATGTATGGGTTTATGTAACCATAAAATTTATGTCAGTCAGAATCTGGGTGTGTTTATTTCTCCAAGATGAGTGTGGATGCACATTACGTATAATTAAAGATCCATGCAGAATTAATACTACGCTACTTTAGACAAGATCCAGTATATGCCGAGTTAACGAGTCAGGAGGTGCTGCGTCACAGGAGGAATGTATActtgcatgtgaatgtgtgtgttccacttGGCTGTGGCTCTTCTCCAGGCCATATGGGTCCTGCTGCGTTTCAGCCTGTTTGTCCTGCAGCCTTTGGCCTGATGGTCCACAGCACTGCAGCATGGCTCGGCTCATCCCACTCCAACACGCTGTTGGGGCTTGTGTCCAGAGTAAGagacacacacctacacagtATCTTGTGTCCTTGAGTTTAATATATATGCTTCTGCTTCTAGGTGGCTTtagaaagcatttttatttcattatgctACAATACTTTGTGCTCATAACCACATTTACACTCTTGGGATGTGGTGGCCTAAATGTGTAagcattattattgttgtaagTGCATCTATTATGAGAATGGACCTGACATGCTTTTTGCAGCAGGTCTGTTGTCTTTTTCGTCAAAGGACTTTTTTTGTGCAATGGCGCCCTTTGAAAATGAAACGTGAAGCTTGCCAGACTCCAGCACTGTTCCTGCACCACTCACATCTCCCCcttgtgcaaaataaaacacagcccTTTGATCTGATTACACAAGAGCTCTATGGTTTCAGAATCACTTTTggccaatatatatatatatgcacagagaaacagagtgaagaagaaaaaggttGGACA

Function

NR:

description
PREDICTED: small integral membrane protein 15

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU75791 True 2832 lncRNA 0.41 1 13570002 13572833

Neighbor

gene id symbol gene type direction distance location
rps4x rps4x,LOC103480264,LOC107373838 coding upstream 403 13564728 ~ 13569599 (+)
hdac8 hdac8,LOC107707919,LOC107711573,LOC107695331 coding upstream 16054 13533817 ~ 13553948 (+)
si:dkey-33c9.6 LOC108267836 coding upstream 69169 13486536 ~ 13500833 (+)
LOC113540489 ponzr1,LOC108267839,LOC108442818 coding upstream 119179 13443794 ~ 13450823 (+)
acadvl acadvl,LOC107738021,LOC107595296,LOC107731915 coding upstream 133406 13420533 ~ 13436596 (+)
nhsl2 nhsl2 coding downstream 801 13573634 ~ 13645984 (+)
arhgap36 LOC108267422,LOC108412584,LOC107702308,LOC107596505 coding downstream 74348 13647181 ~ 13684599 (+)
rasl11a rasl11a,LOC108412587,LOC107596470,LOC106577879,LOC107707904,LOC107684967 coding downstream 119944 13692777 ~ 13699690 (+)
LOC113540276 LOC108267420 coding downstream 151481 13724314 ~ 13738910 (+)
col4a6 col4a6,LOC108267418 coding downstream 225347 13798180 ~ 13880674 (+)
G63936 NA non-coding upstream 65283 13504460 ~ 13504719 (+)
G63898 NA non-coding upstream 102276 13459362 ~ 13467726 (+)
G63901 NA non-coding upstream 152561 13417221 ~ 13417441 (+)
G63889 NA non-coding upstream 182048 13387598 ~ 13387954 (+)
LOC117597082 NA non-coding upstream 302968 13258874 ~ 13267034 (+)
G63973 NA non-coding downstream 122816 13695649 ~ 13748072 (+)
G64025 NA non-coding downstream 182711 13755544 ~ 13759751 (+)
G64049 NA non-coding downstream 330608 13903441 ~ 13909459 (+)
G64102 NA non-coding downstream 439265 14012098 ~ 14012315 (+)
G64103 NA non-coding downstream 440386 14013219 ~ 14013418 (+)
cited1 cited1 other upstream 7736 13558623 ~ 13562266 (+)
LOC113539889 LOC108267838 other upstream 94965 13468552 ~ 13475037 (+)
G63903 NA other upstream 151306 13418377 ~ 13418696 (+)
slc16a13 slc16a13 other upstream 284168 13275462 ~ 13285834 (+)
tmem88b tmem88,bcl6b,LOC108267673 other upstream 350143 13206657 ~ 13219859 (+)
gc2 LOC108267421,LOC108412585 other downstream 132584 13705417 ~ 13719454 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other downstream 682911 14255744 ~ 14269340 (+)
zgc:194930 LOC108268002 other downstream 1059197 14632030 ~ 14658936 (+)
LOC113540079 sh3tc1 other downstream 2450361 16023194 ~ 16039984 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other downstream 2737380 16310213 ~ 16319166 (+)

Expression


Co-expression Network