G64025


Basic Information

Item Value
gene id G64025
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13755544 ~ 13759751 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU75843
AGCCTCATTAAAGCATAACTCTTTTCAACAGTTGCTACAGAATTATTCCAGTATCCTTTATTTGATGTCCATGAGACTCACCGTAAAACCTTGTGGTCCAGTGTCTCCCTTCTGTCCAGGTAAACCAGGTGATCCAGGATTTCCAGAGTAGCCTTTCTCACCCTTCACTCCTCCAGAACCTGGTGGTCCACGGGGCCCCTCTGGGCCAGGAGGACCTTTATGACCTTCTGGGCCTGTCACCAAGCGTCATCAGGAGAAGGTGGAGCCACACCACAGGAGACAGGAAATAAAGGTCAAATGCACAATGCATCTGCGCATAGATTTAGCCAAACAGACACCTGCCAAAACTGGACTCTTCgtttaatatgtatataatgtctttattaattaaggttttatatttacagctaATCTAATAAATGCCTctgctttttttcattctttaaatAGATTAGAAGAAGGAACCCAAACTACCAGGGTTCTAGAAATTTTAATGGAACAATTTAATATTGtttcagattttcttttaaacattttggacaaCTTTGTATTTGTTCATTCTGACTGAGGAAGCCCATATTGGACAGTTCTGTAATGGCTTtacacatcataaatattaacattttcacaTGCAGGTGAAGACACGCACATAAACGgaaacacacagcattacactACTGATCATCCTCTTTTTGAATCACTGGATTCAGCATTACACCAGACAGACATCACActgtggagagaggaaaagagctTTCGTTCCTCAGGAAAAAAGAGGGGTAAGGGAGTCGAGACACATGAGGAAGAATGGATAGGTGAACAGATAAACAGTTGAAGAGCGTGGACACAGTGTGGATGGATCCATGCTGGTTGGGCCCTGTTTGTGTCTCAGTGAAACACACTGATTTGTGCGTGCAAACCTCTACCTCTTACAAACGTTTCTGatatacacaaataataaaagaaggTGATTGAAGGCATGCCCTGGAGTAAGTCaagcactgtgtatgtgtgtagtgctcACTAACTTTGTGCTCCCTATTAGTTTTGTGCAATATGATATTGAGACTTGTGATGATTTGTGCAACATCCATGCAAATCAGTCCCATGACTAAACACATTTAAGATGGCCTCTCTACTGTCTGGTTCTTTCTAGTGTTTAAAAGAGTTGATATTTAAATTATTCTCAGGTGTATCACTTGGAGATCTGGTAGAGCGAGACAGTAGATCTGACCAATGAAAAGCATAACCCTGTTCCTGGAGATGTGATATCCTGCAATATATATAATCTAAAACACCAGAGCTGGTTCATTAAGCTTTTCATGAGCatcatttttggatttttatcCCATTTTCATCCAATTTGGTCAGTTTAACAAATTCCTCCCACTAGGTATCACATCACACcctcacatcacatcacaactATCAAGTGGAGAGGATGAAAactagcacatgcttcctctgaaaTCTGTGAAGCCAGCCTGcatatcttttcaaactgctgctaatgctgTATCACAGAGCAACTGAAAACACAAAGGAAAAAGCTAACTGTCACTTCAAaatacatgagttcacagatgccgatgattggctagtgtctcccTGATTGAAAGGACAGAGTAATGCCCATCCCTCCTACcctgagagcacagccaattttgctctcttggactctctGTCACAGATGGCTGTGAAATTGCTGGGATTCGAACAAGAAATATCTTAATATTAGAACCAAGTTTATTAAGGTAGGGCTGAATTTACACTGTGCAAAGTACACAATCTCATGGAACAGGGTCAGCCACTATGATGTGTATGAGATAAGGGCCAACCTACCTCCTCTTCCTGGTGGTCCAGGGGGACCCTGGAAGCCTTTAGGCCCTTGAATGGACTGACCCGGAGGACCAGGGGGCCCTTGAGAACCAGGGCTGCCTGTTGCACCAGCGGATCCTATATCACCCTTTGGTCCAGGGAAACCAGGGCTGCCAGGCTGGCCAGGAAGGCCAGGGTCTCCTTTCTGACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU75843 True 2029 lncRNA 0.43 2 13755544 13759751

Neighbor

gene id symbol gene type direction distance location
LOC113540276 LOC108267420 coding upstream 16634 13724314 ~ 13738910 (+)
rasl11a rasl11a,LOC108412587,LOC107596470,LOC106577879,LOC107707904,LOC107684967 coding upstream 55854 13692777 ~ 13699690 (+)
arhgap36 LOC108267422,LOC108412584,LOC107702308,LOC107596505 coding upstream 70945 13647181 ~ 13684599 (+)
nhsl2 nhsl2 coding upstream 109560 13573634 ~ 13645984 (+)
rps4x rps4x,LOC103480264,LOC107373838 coding upstream 185945 13564728 ~ 13569599 (+)
col4a6 col4a6,LOC108267418 coding downstream 38429 13798180 ~ 13880674 (+)
ankrd46b ankrd46,ankrd46b,LOC108428588 coding downstream 122561 13882312 ~ 13889584 (+)
LOC113539767 t185a,tmem185a coding downstream 131362 13891113 ~ 13898505 (+)
m1ap m1ap coding downstream 214245 13973996 ~ 14016125 (+)
nagk nagk,LOC107697250 coding downstream 275456 14035207 ~ 14039607 (+)
G63973 NA non-coding upstream 7472 13695649 ~ 13748072 (+)
G63976 NA non-coding upstream 182711 13570002 ~ 13572833 (+)
G63936 NA non-coding upstream 250825 13504460 ~ 13504719 (+)
G63898 NA non-coding upstream 287818 13459362 ~ 13467726 (+)
G63901 NA non-coding upstream 338103 13417221 ~ 13417441 (+)
G64049 NA non-coding downstream 143690 13903441 ~ 13909459 (+)
G64102 NA non-coding downstream 252347 14012098 ~ 14012315 (+)
G64103 NA non-coding downstream 253468 14013219 ~ 14013418 (+)
G64105 NA non-coding downstream 257535 14017286 ~ 14017669 (+)
G64095 NA non-coding downstream 282217 14041968 ~ 14042414 (+)
gc2 LOC108267421,LOC108412585 other upstream 36090 13705417 ~ 13719454 (+)
cited1 cited1 other upstream 193278 13558623 ~ 13562266 (+)
LOC113539889 LOC108267838 other upstream 280507 13468552 ~ 13475037 (+)
G63903 NA other upstream 336848 13418377 ~ 13418696 (+)
slc16a13 slc16a13 other upstream 469710 13275462 ~ 13285834 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other downstream 495993 14255744 ~ 14269340 (+)
zgc:194930 LOC108268002 other downstream 872279 14632030 ~ 14658936 (+)
LOC113540079 sh3tc1 other downstream 2263443 16023194 ~ 16039984 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other downstream 2550462 16310213 ~ 16319166 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other downstream 2608205 16367956 ~ 16370957 (+)

Expression


Co-expression Network