G64049


Basic Information

Item Value
gene id G64049
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13903441 ~ 13909459 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU75876
TtgggaatttaaaaataaaaatgtaaaagagacAAAGAGCAAACCAAGATTAAATAgttcagtatttaaaaaaaaaagaaaaagaaaaaacactcaGTTGACAACAGTCAATCCAGGAGAAGGGAAGTGTTTCTAGACAGGACAGAGAGTCTGATCCTTCACTAGGTTTTCTCATCAATACATTGACATGAAATAAACCGACAACCTcgggaaataaaacacaaggaGAGCTCACTCTGCATCCCTAATatcaaacacaccacacacaacaaGCATAATCCAAAGAACACGCCTGAACTAATCAGTTCATTAAAACTAAATCTAAATTCCTCCGAGAACCACTCCACCTTCAAAATCCACATTTCTTGAACTCTTTCTTTAACAGGATAAAGGGGGTGCACCGTTCCCGGAAGTACTGCAATACCGGGTCGATGCGTGGAGTGGACGGAGCAAGCCCCTATTCCATCTCCCTGCTCCAAAAATCAATTTAATATATGGTCCCCGGGTAGGGGACgtatcagatattaaactgataagaacaGATACTACACTTGATCTTAGCCAAAAGGCCGAGGTACTGCAATACCGGGTCGATGCGTGGAGTGGACGGAGCAAGCCCCTATTCCATCTCCCTGCTCCAAAAATCAATTTAATATATGGTCCCCGGATAGGGGACgtatcagatattaaactgataagaacaGATACTACACTTGATCTTAGCCAAAAGGCCGAGAAGCGATACTTTAGCTCACAATCAACGAGGAGGGACATCCTTCACTACACAACACACGAGGACggcagatactgctttatttactaAATAGTTCATCAAATGTATAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU75876 True 845 lncRNA 0.41 2 13903441 13909459

Neighbor

gene id symbol gene type direction distance location
LOC113539767 t185a,tmem185a coding upstream 4936 13891113 ~ 13898505 (+)
ankrd46b ankrd46,ankrd46b,LOC108428588 coding upstream 13857 13882312 ~ 13889584 (+)
col4a6 col4a6,LOC108267418 coding upstream 22767 13798180 ~ 13880674 (+)
LOC113540276 LOC108267420 coding upstream 164531 13724314 ~ 13738910 (+)
rasl11a rasl11a,LOC108412587,LOC107596470,LOC106577879,LOC107707904,LOC107684967 coding upstream 203751 13692777 ~ 13699690 (+)
m1ap m1ap coding downstream 64537 13973996 ~ 14016125 (+)
nagk nagk,LOC107697250 coding downstream 125748 14035207 ~ 14039607 (+)
hspa12b hspa12b,LOC107697252,LOC107721672,LOC107691462,LOC107744271,LOC107571934 coding downstream 155035 14064494 ~ 14080036 (+)
slc8a4b slc8a4b,LOC108267603,LOC108428577,LOC107721660,LOC107583282,LOC107661969 coding downstream 183035 14092494 ~ 14151289 (+)
ppp1r14bb ppp1r14b,ppp1r14bb,LOC108268202,LOC107583286,LOC107721662,LOC107661967 coding downstream 320514 14229973 ~ 14253890 (+)
G64025 NA non-coding upstream 143690 13755544 ~ 13759751 (+)
G63973 NA non-coding upstream 155369 13695649 ~ 13748072 (+)
G63976 NA non-coding upstream 330608 13570002 ~ 13572833 (+)
G63936 NA non-coding upstream 398722 13504460 ~ 13504719 (+)
G63898 NA non-coding upstream 435715 13459362 ~ 13467726 (+)
G64102 NA non-coding downstream 102639 14012098 ~ 14012315 (+)
G64103 NA non-coding downstream 103760 14013219 ~ 14013418 (+)
G64105 NA non-coding downstream 107827 14017286 ~ 14017669 (+)
G64095 NA non-coding downstream 132509 14041968 ~ 14042414 (+)
G64308 NA non-coding downstream 147068 14056527 ~ 14056887 (+)
gc2 LOC108267421,LOC108412585 other upstream 183987 13705417 ~ 13719454 (+)
cited1 cited1 other upstream 341175 13558623 ~ 13562266 (+)
LOC113539889 LOC108267838 other upstream 428404 13468552 ~ 13475037 (+)
G63903 NA other upstream 484745 13418377 ~ 13418696 (+)
slc16a13 slc16a13 other upstream 617607 13275462 ~ 13285834 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other downstream 346285 14255744 ~ 14269340 (+)
zgc:194930 LOC108268002 other downstream 722571 14632030 ~ 14658936 (+)
LOC113540079 sh3tc1 other downstream 2113735 16023194 ~ 16039984 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other downstream 2400754 16310213 ~ 16319166 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other downstream 2458497 16367956 ~ 16370957 (+)

Expression


Co-expression Network