G64095


Basic Information

Item Value
gene id G64095
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 14041968 ~ 14042414 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU75926
ttttttacatttatttactttttttcttcgTTTTGTTTCAAATAACTGCAATCTTGCATGTAAGAATTTCTACtcaaaaaatcaaataatgttttcatgtgaaaacctCCACAGCTTTTTCTTGCCATTCTACTCAAACTGGCCCATTATCCAGTGAACCACTTTACATCCAGTCACACCCCAAACTGTCCCTCCACACCCACAGTTATGGGGCATGATTATCCCAGCCAGACATAACCTcccctgtttaaaaaaaaaaaaaaaaattcaggcaaggagaaagtaaatacataatCAGGCACGGACTTCTAAGTGAGAGCTGGGGTGATCTGTCTTCTCGGCTTATcaatagaaagaaataaaacggCTCTGTTTTGAGTACAATGTTAGGTCGCGATGGCACCTCCTAGAGGCTGCGTCTAAATTCCCTGCCCTTGTTTAcatgta

Function

GO:

id name namespace
GO:0061448 connective tissue development biological_process
GO:0051216 cartilage development biological_process
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
ko04151 PI3K-Akt signaling pathway
ko04512 ECM-receptor interaction
ko04510 Focal adhesion
ko04974 Protein digestion and absorption
ko05165 Human papillomavirus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU75926 True 447 lncRNA 0.39 1 14041968 14042414

Neighbor

gene id symbol gene type direction distance location
nagk nagk,LOC107697250 coding upstream 2361 14035207 ~ 14039607 (+)
m1ap m1ap coding upstream 25843 13973996 ~ 14016125 (+)
LOC113539767 t185a,tmem185a coding upstream 143463 13891113 ~ 13898505 (+)
ankrd46b ankrd46,ankrd46b,LOC108428588 coding upstream 152384 13882312 ~ 13889584 (+)
col4a6 col4a6,LOC108267418 coding upstream 161294 13798180 ~ 13880674 (+)
hspa12b hspa12b,LOC107697252,LOC107721672,LOC107691462,LOC107744271,LOC107571934 coding downstream 22080 14064494 ~ 14080036 (+)
slc8a4b slc8a4b,LOC108267603,LOC108428577,LOC107721660,LOC107583282,LOC107661969 coding downstream 50080 14092494 ~ 14151289 (+)
ppp1r14bb ppp1r14b,ppp1r14bb,LOC108268202,LOC107583286,LOC107721662,LOC107661967 coding downstream 187559 14229973 ~ 14253890 (+)
LOC113540157 LOC108267639,LOC108428574,LOC101077706 coding downstream 313634 14356048 ~ 14379551 (+)
LOC113540153 nwd2,LOC107661962 coding downstream 533983 14576397 ~ 14622524 (+)
G64105 NA non-coding upstream 24299 14017286 ~ 14017669 (+)
G64103 NA non-coding upstream 28550 14013219 ~ 14013418 (+)
G64102 NA non-coding upstream 29653 14012098 ~ 14012315 (+)
G64049 NA non-coding upstream 132509 13903441 ~ 13909459 (+)
G64025 NA non-coding upstream 282217 13755544 ~ 13759751 (+)
G64308 NA non-coding downstream 14113 14056527 ~ 14056887 (+)
G64459 NA non-coding downstream 252588 14295002 ~ 14295261 (+)
G64462 NA non-coding downstream 253856 14296270 ~ 14296472 (+)
G64668 NA non-coding downstream 637792 14680206 ~ 14680813 (+)
G64673 NA non-coding downstream 719921 14762335 ~ 14762596 (+)
gc2 LOC108267421,LOC108412585 other upstream 322514 13705417 ~ 13719454 (+)
cited1 cited1 other upstream 479702 13558623 ~ 13562266 (+)
LOC113539889 LOC108267838 other upstream 566931 13468552 ~ 13475037 (+)
G63903 NA other upstream 623272 13418377 ~ 13418696 (+)
slc16a13 slc16a13 other upstream 756134 13275462 ~ 13285834 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other downstream 213330 14255744 ~ 14269340 (+)
zgc:194930 LOC108268002 other downstream 589616 14632030 ~ 14658936 (+)
LOC113540079 sh3tc1 other downstream 1980780 16023194 ~ 16039984 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other downstream 2267799 16310213 ~ 16319166 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other downstream 2325542 16367956 ~ 16370957 (+)

Expression


Co-expression Network