G64668


Basic Information

Item Value
gene id G64668
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 14680206 ~ 14680813 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU76581
GTCAGTATAGAATTGCACATCcaaggtgtgtatatatatatatataatgtgtgtgtgtgtgtgtatgtgatgtacAGAAACTTCTTCTTCTAAATTCTGAAAACATATCGATTTTATGTACTAAGTCTGTCCATAATAATACTGATTTCTAATAACACTattatactaataataatactgctaCTGGATTGTAGTAGTAAGGCAGTGTAACATGAAATGTTTCCCccaaacacagtaacacagctTCAGGTGTAACATATTAATAACGTCgacatcaaataaaatatacaaccCCAGAACAAATGAACATCCTGAACCTCACACAAGTTTATTTAGGGCTCTGCGCCTGGAGTTAGCCTTAGCCTGCTCGCCACAATGCTAGCACACTCGCTTACCTCCTGCTCTTCGTTagcagtcatgttttatttatcagtttgCCAGTCTACTCGCTTCAGTCTAATTATCAAACCTAATACCCTATTTAGATAATCTATAACTATAGCAAGGTTTATACAACCAGATTGAACAACTCATGCTGATCGGCTGTTTTATTAGCTGTCAGGCGCTACTCCGGCCGCAGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU76581 True 582 lncRNA 0.37 2 14680206 14680813

Neighbor

gene id symbol gene type direction distance location
LOC113540153 nwd2,LOC107661962 coding upstream 57682 14576397 ~ 14622524 (+)
LOC113540157 LOC108267639,LOC108428574,LOC101077706 coding upstream 300655 14356048 ~ 14379551 (+)
ppp1r14bb ppp1r14b,ppp1r14bb,LOC108268202,LOC107583286,LOC107721662,LOC107661967 coding upstream 426316 14229973 ~ 14253890 (+)
slc8a4b slc8a4b,LOC108267603,LOC108428577,LOC107721660,LOC107583282,LOC107661969 coding upstream 528917 14092494 ~ 14151289 (+)
hspa12b hspa12b,LOC107697252,LOC107721672,LOC107691462,LOC107744271,LOC107571934 coding upstream 600170 14064494 ~ 14080036 (+)
adam19a adam19a,LOC108267694,LOC108428568,LOC107708434 coding downstream 5441 14686254 ~ 14761565 (+)
paqr9 paqr9 coding downstream 143289 14824102 ~ 14829911 (+)
zmp:0000000660 arap2 coding downstream 208487 14889300 ~ 14968601 (+)
cckar cckar coding downstream 1223542 15904355 ~ 15916921 (+)
plaa plaa,LOC107549730,LOC107661955,LOC107660709 coding downstream 1311362 15992175 ~ 16000945 (+)
G64462 NA non-coding upstream 383734 14296270 ~ 14296472 (+)
G64459 NA non-coding upstream 384945 14295002 ~ 14295261 (+)
G64308 NA non-coding upstream 623319 14056527 ~ 14056887 (+)
G64095 NA non-coding upstream 637792 14041968 ~ 14042414 (+)
G64105 NA non-coding upstream 662537 14017286 ~ 14017669 (+)
G64673 NA non-coding downstream 81522 14762335 ~ 14762596 (+)
LOC117597182 NA non-coding downstream 296513 14977326 ~ 15011493 (+)
G64963 NA non-coding downstream 520496 15201309 ~ 15201528 (+)
LOC117597190 NA non-coding downstream 825479 15506292 ~ 15556924 (+)
G65115 NA non-coding downstream 1188385 15869198 ~ 15870771 (+)
zgc:194930 LOC108268002 other upstream 21270 14632030 ~ 14658936 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other upstream 410866 14255744 ~ 14269340 (+)
gc2 LOC108267421,LOC108412585 other upstream 960752 13705417 ~ 13719454 (+)
cited1 cited1 other upstream 1117940 13558623 ~ 13562266 (+)
LOC113539889 LOC108267838 other upstream 1205169 13468552 ~ 13475037 (+)
LOC113540079 sh3tc1 other downstream 1342381 16023194 ~ 16039984 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other downstream 1629400 16310213 ~ 16319166 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other downstream 1687143 16367956 ~ 16370957 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other downstream 2654684 17335497 ~ 17401388 (+)
LOC113539940 NA other downstream 2928679 17609492 ~ 17620079 (+)

Expression


Co-expression Network