G65170


Basic Information

Item Value
gene id G65170
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16001155 ~ 16001461 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU77137
TGTAACATGTAACTATACAACATGAAAGCTTGATATTCACTGTGTTAGAAAAGCAGACTTAGTaaggttttagacattttacatatatagtCCTGTTATACCTGTAGACTGACAAACAAAATATACTTTCTTCATCATAAACAAAACACCACATTTATGATTCTTCTCCTTGAACTTTATTTATCAAACTCTTCTCACGTGCAGTTAACCCCAGGTTATACAGTTCATATTTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU77137 True 234 lncRNA 0.31 2 16001155 16001461

Neighbor

gene id symbol gene type direction distance location
plaa plaa,LOC107549730,LOC107661955,LOC107660709 coding upstream 210 15992175 ~ 16000945 (+)
cckar cckar coding upstream 84234 15904355 ~ 15916921 (+)
zmp:0000000660 arap2 coding upstream 1032554 14889300 ~ 14968601 (+)
paqr9 paqr9 coding upstream 1171244 14824102 ~ 14829911 (+)
adam19a adam19a,LOC108267694,LOC108428568,LOC107708434 coding upstream 1239590 14686254 ~ 14761565 (+)
htra3b htra3,LOC107757896,LOC107707797,LOC107660743,LOC107661977,LOC107549726 coding downstream 38744 16040205 ~ 16050628 (+)
ttc5 ttc5,LOC107738047,LOC107683587 coding downstream 84216 16085677 ~ 16092460 (+)
si:ch211-212k18.5 sall2 coding downstream 97422 16098883 ~ 16107737 (+)
slc7a7 slc7a7,LOC107558406,LOC107738042,LOC107683525,LOC107731885,LOC107574338 coding downstream 107515 16108976 ~ 16120319 (+)
casp23 NA coding downstream 123555 16125016 ~ 16129309 (+)
G65115 NA non-coding upstream 130384 15869198 ~ 15870771 (+)
LOC117597190 NA non-coding upstream 444231 15506292 ~ 15556924 (+)
G64963 NA non-coding upstream 799627 15201309 ~ 15201528 (+)
LOC117597182 NA non-coding upstream 989662 14977326 ~ 15011493 (+)
G64673 NA non-coding upstream 1238559 14762335 ~ 14762596 (+)
G65184 NA non-coding downstream 18396 16019857 ~ 16055145 (+)
G65199 NA non-coding downstream 60627 16062088 ~ 16063461 (+)
G65335 znf638 non-coding downstream 221957 16223418 ~ 16231115 (+)
G65382 NA non-coding downstream 390668 16392129 ~ 16392363 (+)
G65395 NA non-coding downstream 429000 16430461 ~ 16430686 (+)
zgc:194930 LOC108268002 other upstream 1342219 14632030 ~ 14658936 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other upstream 1731815 14255744 ~ 14269340 (+)
gc2 LOC108267421,LOC108412585 other upstream 2281701 13705417 ~ 13719454 (+)
cited1 cited1 other upstream 2438889 13558623 ~ 13562266 (+)
LOC113539889 LOC108267838 other upstream 2526118 13468552 ~ 13475037 (+)
LOC113540079 sh3tc1 other downstream 21733 16023194 ~ 16039984 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other downstream 308752 16310213 ~ 16319166 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other downstream 366495 16367956 ~ 16370957 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other downstream 1334036 17335497 ~ 17401388 (+)
LOC113539940 NA other downstream 1608031 17609492 ~ 17620079 (+)

Expression


Co-expression Network