G65199


Basic Information

Item Value
gene id G65199
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16062088 ~ 16063461 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU77172
TGAAAGACATAACCATATGTGATACTGCAAAAACCTTAGGAAGAAAATGGGCATGTTTGGTTTTGACATTTGAAAGTTAATGAGAACTCCAGGTTTGatattttggccaaaaatggcCTCTTTTCTATAAGAGCACTGGTTATGCACTTTGCTTGATTTGTTGCAATTTTCCAGTGCAAAATTTTGCCAGCTAACTGCTAGACTGCATTTGAAATCTAACACAAGCAGATAAAATGATGTGTGGAATATGGACAAATATCCAGGCCTTGGATAGACCATAATCTACACTGTTGTGTTGCTGGCACCAAGTTTCCAGCAGGGTAGCAGGTCAGAGTAAAAAATATACTGGTATATTGGTTACCATGCAGCAAGTTGTAGCACTGTTAAATCGTTCACTGAGTTGAAAATGTCCCCTCGACAGTAGATTATCTTATTGTGGCCCTCTCTGTACAGAAATGTCAACATGAAGGATAGAGTTCAAACTTTCCATGGCAAGTTATTTGGGAAAACAGTGCTAAAGTGTCATTATTACACACTCTACCTGCTGAGTCCATGCACTCCTCTCCTGAGGCAGCTGTGAACCTGCTTTCCAGAATTCTTTTCCAGTCATCCAGGAAGTTCACTGTCTCCAGAGGAGACTCAATCCTTCCTTTACCTAGAGGtgaatgagacagaaagagagacagaaagagagactcagagagagagagagagagagagagagagagagaacacataGGGCAGGTCATCCACTATGCaccaaaatatttcacataaactTTGTTCCAGCAAATTAGCATGCAGACTCTAAACTGCCCATTAAAAAGTTCTATACATTGAGGGAAAGACCTTGCTGCTGGTGCTGGAGCAGGCTAAGCAGGTAATTGCTAGTTTGTTGCAGAAGGACGTTGTTGTCCCCCTCATATGTGCAGTTCGGGTCATTGTCATCACGGATGTCTCCGAGGCGGTTCACTAGGGAATGAACACAAGAAGGGATTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU77172 True 999 lncRNA 0.42 2 16062088 16063461

Neighbor

gene id symbol gene type direction distance location
htra3b htra3,LOC107757896,LOC107707797,LOC107660743,LOC107661977,LOC107549726 coding upstream 11460 16040205 ~ 16050628 (+)
plaa plaa,LOC107549730,LOC107661955,LOC107660709 coding upstream 61143 15992175 ~ 16000945 (+)
cckar cckar coding upstream 145167 15904355 ~ 15916921 (+)
zmp:0000000660 arap2 coding upstream 1093487 14889300 ~ 14968601 (+)
paqr9 paqr9 coding upstream 1232177 14824102 ~ 14829911 (+)
ttc5 ttc5,LOC107738047,LOC107683587 coding downstream 22216 16085677 ~ 16092460 (+)
si:ch211-212k18.5 sall2 coding downstream 35422 16098883 ~ 16107737 (+)
slc7a7 slc7a7,LOC107558406,LOC107738042,LOC107683525,LOC107731885,LOC107574338 coding downstream 45515 16108976 ~ 16120319 (+)
casp23 NA coding downstream 61555 16125016 ~ 16129309 (+)
LOC113540526 LOC108267491 coding downstream 71903 16135364 ~ 16139870 (+)
G65184 NA non-coding upstream 6943 16019857 ~ 16055145 (+)
G65170 NA non-coding upstream 60627 16001155 ~ 16001461 (+)
G65115 NA non-coding upstream 191317 15869198 ~ 15870771 (+)
LOC117597190 NA non-coding upstream 505164 15506292 ~ 15556924 (+)
G64963 NA non-coding upstream 860560 15201309 ~ 15201528 (+)
G65335 znf638 non-coding downstream 159957 16223418 ~ 16231115 (+)
G65382 NA non-coding downstream 328668 16392129 ~ 16392363 (+)
G65395 NA non-coding downstream 367000 16430461 ~ 16430686 (+)
G65495 NA non-coding downstream 368484 16431945 ~ 16442900 (+)
G65542 NA non-coding downstream 451176 16514637 ~ 16514841 (+)
LOC113540079 sh3tc1 other upstream 22104 16023194 ~ 16039984 (+)
zgc:194930 LOC108268002 other upstream 1403152 14632030 ~ 14658936 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other upstream 1792748 14255744 ~ 14269340 (+)
gc2 LOC108267421,LOC108412585 other upstream 2342634 13705417 ~ 13719454 (+)
cited1 cited1 other upstream 2499822 13558623 ~ 13562266 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other downstream 246752 16310213 ~ 16319166 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other downstream 304495 16367956 ~ 16370957 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other downstream 1272036 17335497 ~ 17401388 (+)
LOC113539940 NA other downstream 1546031 17609492 ~ 17620079 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 1936697 18000158 ~ 18010962 (+)

Expression


Co-expression Network