smim20


Basic Information

Item Value
gene id smim20
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 15973579 ~ 15991985 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU77227
TGACAAGTGATAACAAACATGGCGAGCAGAAGATTGACGGTGTTCGTATTCGGAGGCTTTGCAGCTGCTGTAGCAGCGGTGTTTTATCCTATATTTTTTCATCCTCTTATTCACACAGATGATTACAAACAAATCCAGAAGGTTAACCGAGCTGGAATCAACCAAGCAGATGTTCAGCCTGTTGgtgTGAAGATCTGGTCGGATCCATTTAAACCGAAATCGTGATGTGACTGATGCTGAAAGCAGACAGGAGAGGAGGTTCATGAGCAAGTGTTTGGATTTCAGGTGTTTGACACAGATTAAAGACTCATAGACTGGTCCAAGCAAACACTCCTCTcctgagcgagtgagtgagtgagtgtgtgtgtgtgtgtgtgtgtgtgaataagagAAAGAAACCTTACGTCACTGTTTAGTATGTCCTCTGCTGTAATGTTTCTGATTCAGCTCTTTACAGGGCTTGATGGTTGGCCTTTAAGCTGAAACAGGAGTGTTAGAGCAGGAGGAACTGGCTGTACAGACTGTCACTACTTTGATACTTTATCCTATGAATAAAGTTTTATAAGAAAGTTGTTTCAAATGGGTACAATATAGTAGCGTGCATATTTTATTTGAGAAAAGGAAACTATgttaagaaattttaaaaagggGCATATGATGTCAAGATTTTAAAACATCAACTACAGCATAACCTGCTGAGCTATAAGATTGACATTTGTCAAATTAcataatacatatttaatacatCATATATAATAAAAGATGTGTGATGCACATAAAAATACATGTCCAACTGAAACTTTAATTTGAAAAGTAAACGAAACCCAACCTAACTTTGAATCAAAATTCTAGCTGCGAAAGCTGTATAATATACTGAAAAACGAACTGCATGGAAGACA
>XM_026936952.2
TCGGTCTCCCAAGAAATTCGCCAATCGACAGAATTTTTCGGAATGTAGGCGGggacaaataataatattttgagaGAACTCTACAAGATAAATGACCCACGTTATGCTTGATAAAATAGCATCTTCGGCTCTGTCCTTCTCTGACAAGTGATAACAAACATGGCGAGCAGAAGATTGACGGTGTTCGTATTCGGAGGCTTTGCAGCTGCTGTAGCAGCGGTGTTTTATCCTATATTTTTTCATCCTCTTATTCACACAGATGATTACAAACAAATCCAGAAGGTTAACCGAGCTGGAATCAACCAAGCAGATGTTCAGCCTGTTGgtgTGAAGATCTGGTCGGATCCATTTAAACCGAAATCGTGATGTGACTGATGCTGAAAGCAGACAGGAGAGGAGGTTCATGAGCAAGTGTTTGGATTTCAGGTGTTTGACACAGATTAAAGACTCATAGACTGGTCCAAGCAAACACTCCTCTcctgagcgagtgagtgagtgagtgtgtgtgtgtgtgtgtgtgtgtgaataagagAAAGAAACCTTACGTCACTGTTTAGTATGTCCTCTGCTGTAATGTTTCTGATTCAGCTCTTTACAGGGCTTGATGGTTGGCCTTTAAGCTGAAACAGGAGTGTTAGAGCAGGAGGAACTGGCTGTACAGACTGTCACTACTTTGATACTTTATCCTATGAATAAAGTTTTATAAGAAAGTTGTTTCAAATGGGTA
>XR_004577994.1
GTTATGCTTGATGTATATTATTTCCCTGTATTACTGAGCTTAGACTCTTTTTAACATAGCTTGAAGTGTTGAGTTTGAGAGTTGAGTTGTACTGAATTTATTTAGCTATGTTTTCGAATTTTTAAAAGCCgaatttttgtgtttattttttttaatttgaagaaCTTTACCCCGGAAGAAAATATCACCATactaagtttttatttttgttaacaaAGCTAactaaatttattataatatcgatgtatttgatttatttaaccatatttttctattttttaaaattctaatgtttttctttctttttttttttttaatttgttgaaCTTTACCCCGGAAGAAAATAGCATCTTCGGCTCTGTCCTTCTCTGACAAGTGATAACAAACATGGCGAGCAGAAGATTGACGGTGTTCGTATTCGGAGGCTTTGCAGCTGCTGTAGCAGCGGTGTTTTATCCTATATTTTTTCATCCTCTTATTCACACAGATGATTACAAACAAATCCAGAAGGTTAACCGAGCTGGAATCAACCAAGCAGATGTTCAGCCTGTTGgtgTGAAGATCTGGTCGGATCCATTTAAACCGAAATCGTGATGTGACTGATGCTGAAAGCAGACAGGAGAGGAGGTTCATGAGCAAGTGTTTGGATTTCAGGTGTTTGACACAGATTAAAGACTCATAGACTGGTCCAAGCAAACACTCCTCTcctgagcgagtgagtgagtgagtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatg

Function

NR:

description
small integral membrane protein 20

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU77227 True 899 lncRNA 0.38 3 15989549 15991516
XM_026936952.2 False 727 mRNA 0.42 4 15989862 15991985
XR_004577994.1 False 768 misc_RNA 0.36 4 15973579 15991885

Neighbor

gene id symbol gene type direction distance location
rbpjb rbpj,LOC107597867,LOC107549731,LOC107707427 coding downstream 9611 15918848 ~ 15963968 (-)
trnap-ugg_2 NA coding downstream 97681 15875827 ~ 15875898 (-)
stim2b stim2,LOC107707336,LOC107661953,LOC107684943,LOC107757910 coding downstream 98095 15826058 ~ 15875484 (-)
pcdh7b pcdh7,LOC107568147,LOC107684944,LOC107753999 coding downstream 527807 15310629 ~ 15445772 (-)
dthd1 dthd1 coding downstream 1080424 14875694 ~ 14893155 (-)
tdrd7b tdrd7,LOC103364796,LOC102294308,LOC108428553 coding upstream 10174 16002159 ~ 16017892 (-)
LOC113540081 LOC108267731 coding upstream 36194 16028179 ~ 16030916 (-)
man2b2 man2b2 coding upstream 81802 16073787 ~ 16085506 (-)
LOC113540382 ccnb1ip1 coding upstream 100938 16092923 ~ 16098115 (-)
oxa1l oxa1l coding upstream 128397 16120382 ~ 16125010 (-)
G65253 NA non-coding downstream 13212 15906094 ~ 15960367 (-)
G65260 NA non-coding downstream 48418 15924454 ~ 15925161 (-)
G64964 NA non-coding downstream 772034 15201298 ~ 15201545 (-)
G64929 NA non-coding downstream 1005040 14967207 ~ 14968539 (-)
G64860 NA non-coding downstream 1111380 14861924 ~ 14862199 (-)
LOC113540579 NA non-coding upstream 201107 16193092 ~ 16196596 (-)
G65416 NA non-coding upstream 263966 16255951 ~ 16260298 (-)
G65422 NA non-coding upstream 270940 16262925 ~ 16264165 (-)
G65423 NA non-coding upstream 275251 16267236 ~ 16267546 (-)
G65445 NA non-coding upstream 308011 16299996 ~ 16300708 (-)
tbc1d19 tbc1d19,LOC107660707 other downstream 69224 15879471 ~ 15904355 (-)
G64436 NA other downstream 1729898 14232809 ~ 14243681 (-)
zgc:194312 LOC108267841 other downstream 2533059 13436056 ~ 13440520 (-)
acap1 acap1,LOC107731905,LOC107683535,LOC107595305,LOC107675497 other downstream 2665101 13285999 ~ 13308478 (-)
tmem256 tmem256,LOC107659713,LOC107564775,LOC107560291 other downstream 3484017 12484723 ~ 12489562 (-)
acox3 acox3 other upstream 62543 16054528 ~ 16071692 (-)
tnfsf12 tnfsf12 other upstream 427179 16419164 ~ 16426624 (-)
leap2 LOC100304644 other upstream 600577 16592562 ~ 16594505 (-)
bmp15 LOC108267203 other upstream 611824 16603809 ~ 16605717 (-)
G66053 NA other upstream 1408609 17400594 ~ 17402464 (-)

Expression


Co-expression Network