G65472 (LOC108267266,LOC107595290,LOC107702060,LOC107707052,LOC107738084,LOC108434590,LOC105907155)


Basic Information

Item Value
gene id G65472
gene name LOC108267266,LOC107595290,LOC107702060,LOC107707052,LOC107738084,LOC108434590,LOC105907155
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16369532 ~ 16373147 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU77517
GCTGCTCGTAGTCTGTTGATAATTAGATGTTACGTTTACTGTATCCATTACAGTGTTTGTCATTATTTAAGATATAAACATTTGCTTGTAGCTATGTAGTTTTGTAACACCAAGATGAGTCAGAAAGTAAAAGACGTGAGAAAACTGCAGTGTTGTAGATAAATACATGTAGATCGCAGTAAtgttaggggtgtgtgtgttgtctgaaGTGACAGTGGGTCGGGTCACGTTTATTTACATTCTGTCACAACAGCACTCTCTCAATCAGCCGCGAGTCTCTCTGCAAGCCTGCGCTCCACATTCGGCTTTTACAAAGCCTTGTTACACTTGTTTATGTGGATATTAGCCTTAGTAGCTTATCAACCAGAGCTACCAGCACTATGGACTGAAGAAACTGTaagcatccaaacacaaagtCCTGAAGAGCAGGCATCCTCTGACAGCAAAGCCTTCTCAAGAAAATGTGGGCTGTATTTCCTTGAATGACACCCTTGACTTTTGATACTTGTGAAATGTAAACGCTTTGTGCTTTTGTTAATCCACTTTAATTATCTTCTGCCATAACACAATAAAATTCCATTATGCTTGCTGTTATTTCAGTATATCTGCTTAAAGCAATGTTAAAATGAACTGCAAGCACGAACATGTTATTACTACTGTATGGTGAGATTATGTACAACATTGTGTTTTCTGTATAAATATTCATGTTTGAATTAATAGGGCTCAGAAAATGCAATACATTAATTGAATGAAGTTTAAGAAGAAAGTGACACATTGCTGTGATATTTATGCCTCTCCACAGACACACCTGTTACAATGAAACACTTTATTAACAGTTACAATTTAGaatgaatatatttcattatgttGCAATATCAGCATTTGTGTTGTATATGATAATAGTCTGCTCCTTAGGTCAAAGTTCAGTGAGATCATCATTGAAGTACAGACATATGGATGGAGTGAAGAGGTCACGATCCATCCGACAACGGTCCAGTTCCTCATCTTCATCAAGAATCCCATTTTCACTCAAGGTTTTACCCATGTCCAGATTGACACCGTTGTGCTTCCAGGTGTAGCTGGCTGCGTGGGAGTTGTAGCGCAGGTAACGATGCAAAATCTCATTCAGTGTTTCCTCAGAACATACCTGGCCAGATATTAAAGGGGTATCAGGTGTCAGTCCTGTTCCTGACGTTATAGATTTGAAATACAACACAATTAATTTTTCCctcaaaacaaaatgcattgtCAGGAATTCCTTCACAGAGGCTTTATACAAACTGTATAAGAAGCAGAGCTTCCTGGATTTACCAAAAGAGAGGGGAAGGAATTTGTCATTTTGATCCAATGGTGGTGCATCGCCAAGTAGCACTggagatttaaattttttgggGGTTTGACGTGGAGAGCATAAAAGCAAGACAATAGGAATAATCCTGTATGCCTTTGGACCATCCAGAATAGCCTTATGCCAGATGAGGCATTTGGCAGGAGCATGCTTGGCCACCCTGCTGCAGTCACTGGACTGTAGGATTAAATCATGAACCCAGGCTTGGACCACTTGTACACCCAGCGGCATAACAGCAGTAACATTTCCCTTTGTCGAGCAGGAGGAGAATTAGATGCAGAAAGCAAAGGGAGGGTAAAATGAACTAAGAAGTCAAAAGAGGATTGGGGGAGGGCAAAGTGAGAAGAATCCAGAAATAGATCAATCCTGCCCTCTTCAGCACGCTAAAGCACAGTGCAGCTAACCCAgttgacaaaagaaaaataacagatttatgCAACATTTAGGCTTATGCATAAGCAGACATACATTTTGCACATACAGCCATCGTTGACTTTTATGCACTGACATCTTTGATCTAATCAGTGCACCTTGGATTCACCCTGGAGACAGACCATGATTTTATATGAGAGAAGAATTTGCAACCGTATAACATTGGCACATCAGAACTCATAACTGTTGAGTACAGTGCAGCTGGACTTTACCTCCAACCTCTGTTCCTGGGCAGTGAGTGTGTTGATGATACGGATCCAGCGGGCCTTGGCTGTCAGAATGCCAACTTCGTAGCGCATATCTTTCCACCAAGGCTTCCCAAAATCATTGGCCCAGTCAGTGCGCGGGCACGTGGGGGGCACATGCACAAAACGCCCCCTGGGTGTGTAATACTTCACACAGCCGGTTAAAGGGTCAACATGGGTAAGAAT

Function

NR:

description
cytochrome b5 domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU77517 True 2211 lncRNA 0.41 2 16369532 16373147

Neighbor

gene id symbol gene type direction distance location
snx15 snx15,LOC102775858 coding downstream 26708 16336256 ~ 16342824 (-)
prox3 LOC108267633 coding downstream 36740 16327573 ~ 16332792 (-)
tmem179ba t179b coding downstream 43521 16321650 ~ 16326011 (-)
znf638 znf638,LOC108267493 coding downstream 138392 16207837 ~ 16231140 (-)
LOC113539957 NA coding downstream 177963 16158387 ~ 16191569 (-)
LOC113540241 NA coding upstream 58789 16431936 ~ 16439205 (-)
LOC113540674 LOC108268333 coding upstream 67932 16441079 ~ 16449830 (-)
si:dkey-19b23.7 si:dkey-19b23.7,LOC108434614,LOC107683551,LOC107597093 coding upstream 92255 16465402 ~ 16470131 (-)
si:dkey-19b23.10 LOC108268326 coding upstream 109117 16482264 ~ 16495470 (-)
LOC113540033 NA coding upstream 125826 16498973 ~ 16504549 (-)
G65475 NA non-coding downstream 1037 16368141 ~ 16368495 (-)
G65463 cldn15,LOC103041259,LOC108247766,LOC108434589 non-coding downstream 16261 16343064 ~ 16353271 (-)
G65445 NA non-coding downstream 68824 16299996 ~ 16300708 (-)
G65423 NA non-coding downstream 101986 16267236 ~ 16267546 (-)
G65422 NA non-coding downstream 105367 16262925 ~ 16264165 (-)
G65491 NA non-coding upstream 54054 16427201 ~ 16427407 (-)
G65493 NA non-coding upstream 55996 16429143 ~ 16429358 (-)
G65494 NA non-coding upstream 57989 16431136 ~ 16431518 (-)
G65508 NA non-coding upstream 78530 16451677 ~ 16451892 (-)
G65700 NA non-coding upstream 232860 16606007 ~ 16606592 (-)
acox3 acox3 other downstream 297840 16054528 ~ 16071692 (-)
smim20 NA other downstream 377547 15973579 ~ 15991985 (-)
tbc1d19 tbc1d19,LOC107660707 other downstream 465177 15879471 ~ 15904355 (-)
G64436 NA other downstream 2125851 14232809 ~ 14243681 (-)
zgc:194312 LOC108267841 other downstream 2929012 13436056 ~ 13440520 (-)
tnfsf12 tnfsf12 other upstream 46017 16419164 ~ 16426624 (-)
leap2 LOC100304644 other upstream 219415 16592562 ~ 16594505 (-)
bmp15 LOC108267203 other upstream 230662 16603809 ~ 16605717 (-)
G66053 NA other upstream 1027447 17400594 ~ 17402464 (-)
rnaseka LOC108267746 other upstream 1066330 17439477 ~ 17444188 (-)

Expression


Co-expression Network