G65580


Basic Information

Item Value
gene id G65580
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16569687 ~ 16577737 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU77650
TATCAAAGGACTGTGCTGAAAAGGTCTTTAgggaagggggaaaaaaaacagaaaatagtgTAAGGATCAGGTTTTCCAGTACAATTCAGTTGGAAGAATCTGTTCTAAACAATTTCAAACAGATTTCACAATCGTCACACTGCCATGCATCTGCAGCCCCTATAAAACCCATTATTGTGATAACTGTAGCTTCTTTGTATAATGGATTACCCATTGTGAGGTGGTGTGTTGATTTTGTCAGCAAATTATGTATAAGTTTATAATACTATTTTTAGTACATTGCTCTCTGCAAACATTAATTATTACAGCAGGTTTGAAAATTTGCTGATTGCTCCAAATTGAGCCAGACTGAAGCGTGGCATGTTTGACATTTCACCTTACTCTGAGCCGACCAAGACAATCTCCTGTCTTCCAGCTGCAAATGGAGACACAGCTTATTCTTACCGCTCACGCAACAGGGGAAATTACAGTGAGAAGTTAAAGTTCCCTATACCAATGCTACTGTCAGAGGTAGTACATAAAAAGAGCTTGTGTTGCTGGTTGCTAAATAGTTACTTACCATCTTCATATCACTTTTCAGTTTGCTGATGCCAGCACGCTCACTTTTGGTGGCACCCACATGGCCGACTTCATGGATAGAGATGGCAGGACTCACACCTGTATCCACTGAACACAAAAAACATGTACCTGAGGTGTAAAGGTGAAGATAGTGTTGCGGATGATGTAGAGCTTGGAGGTCCCCAATACACCAATCCTGCGATATGGCCTGCCAGTCAGCCCCAGCCTCTGATTACGTCCTTTGGGAGAAAAAATTAACCAAATGAATCACTTACAGTGGTCTGATCTGTTGGAAAGTTTTTAACAGTAGGGCATGGCTCCTACCTAGTCGGGCGTAAATGTAACTAAGAACTCGAGAAGGTTGCACTCTGATGGGGTGGATGTCTGCCACTGTATCCACCTCTATCCCATTCTTCAGTAGCAATGCCTTAATCTCATCATTTTCTGCCAGAatgcacactacacaataccaagaacaaataaacaaacatccAAGGCTTAGAACATCACATGAAATTGACAGTATATGAAACTATTCTAGCTGATATAATTTGCCTAAAAATCATACTTGCCTTGGACAACCACATCAGGCTTGGGGATGGTGGAGAATCTGCGGTTGAG

Function

GO: NA

KEGG:

id description
ko04151 PI3K-Akt signaling pathway
ko04512 ECM-receptor interaction
ko04510 Focal adhesion
ko04974 Protein digestion and absorption
ko05165 Human papillomavirus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU77650 True 1179 lncRNA 0.42 2 16569687 16577737

Neighbor

gene id symbol gene type direction distance location
zpax4 LOC108268120 coding upstream 79204 16470260 ~ 16490483 (+)
si:dkey-19b23.8 LOC108268122,LOC108434612,LOC103044025,LOC107683552,LOC107707061,LOC105907161 coding upstream 104459 16460591 ~ 16465228 (+)
chd3 chd3,LOC107738011 coding upstream 150757 16371997 ~ 16418930 (+)
dnajc3b LOC108267637,LOC108434608,LOC107707053,LOC107683555,LOC107702051 coding upstream 203496 16356241 ~ 16366191 (+)
cldn15a cldn15,LOC103041259,LOC108434589 coding upstream 213724 16352761 ~ 16355963 (+)
shroom4 shroom4,LOC107588210,LOC104951873 coding downstream 27959 16605696 ~ 16648129 (+)
cskmt mettl12 coding downstream 76084 16653821 ~ 16655884 (+)
krcp LOC108267668,LOC108434626 coding downstream 91720 16669457 ~ 16674227 (+)
mark2b mark2 coding downstream 97698 16675435 ~ 16715097 (+)
naa40 naa40,LOC107749810,LOC107691908,LOC107750594,LOC107668433 coding downstream 158330 16736067 ~ 16745357 (+)
G65542 NA non-coding upstream 54846 16514637 ~ 16514841 (+)
G65495 NA non-coding upstream 126787 16431945 ~ 16442900 (+)
G65395 NA non-coding upstream 139001 16430461 ~ 16430686 (+)
G65382 NA non-coding upstream 177324 16392129 ~ 16392363 (+)
G65335 znf638 non-coding upstream 338572 16223418 ~ 16231115 (+)
G65601 NA non-coding downstream 14710 16592447 ~ 16594457 (+)
G65643 NA non-coding downstream 98792 16676529 ~ 16677366 (+)
G65644 NA non-coding downstream 146158 16723895 ~ 16729352 (+)
G65654 NA non-coding downstream 174123 16751860 ~ 16752090 (+)
LOC113539905 NA non-coding downstream 180490 16758227 ~ 16763461 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other upstream 198730 16367956 ~ 16370957 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other upstream 250521 16310213 ~ 16319166 (+)
LOC113540079 sh3tc1 other upstream 529703 16023194 ~ 16039984 (+)
zgc:194930 LOC108268002 other upstream 1910751 14632030 ~ 14658936 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other upstream 2300347 14255744 ~ 14269340 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other downstream 757760 17335497 ~ 17401388 (+)
LOC113539940 NA other downstream 1031755 17609492 ~ 17620079 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 1422421 18000158 ~ 18010962 (+)
frem1a frem1 other downstream 1535696 18113433 ~ 18143631 (+)
G66492 LOC108267609,LOC108437090 other downstream 1619575 18197312 ~ 18208564 (+)

Expression


Co-expression Network