G65601


Basic Information

Item Value
gene id G65601
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16592447 ~ 16594457 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU77679
CAATATTCAAATAATATAGGATTAAAAGGTGCTTTTTATCATTGTTGAAAAATTGCAATGCTTTTAAAAAGCTAGTTTACTGGAATATCTCATTTTAGACAACATTCCACTTACATATGTTTgataataaaacttttatttagttaatattATTTCATTCAGACATCATATGTAGCATACACAAAAGCAACTCTCATACATTCAGTAATACACTCATACATTCAGTAATGATGTCACTAAACATCTAAGGTAACAGTTTCAGAACATTTTCTCAGTCACTCAAAAGCATACACTGAAGCatacaaaataatcaaatataataaatagattatcCAGCAGAAGAATCTTGAATATTCTAACAGTGTTATGTGAGATGTATGACAAATGTCAGGTCTGTATCAGcacttacataaataaaaagccaGAAAAAGTTTTCCACATAAAAAAAGCACTAAAACATCAGGAAACAGAAGTAAGCTGTGCAACTGCAATAACAGTACCTTAATTCATTCAACTAAGGCCTTTAATCTTTGCACTGTTaatcacactttctctctctctttctgctgaaGCATATCTGTAGTTCAATGACACTCGGGTTGAAAGTCTACACAGGCTGTACATGCGACCTGCTGCCAGCTCTACTTGTGCAGCATCCAGGCATTACGTGATCTAATACCAAGAGCTGGTCTTCCAGAAACAGCCTAGTTCAAGGCTCAGTATGTGTTTAGATAACCAACTCTAGCTGTATTTTatccatcacaccatcactaGCACCACCCAAAATCTGATATGTGCACAGTATGTGATaaaattgaatattaaataaaataataacaataataataataataaagcacaaTAGTATACACGTAGTGTATTATACTGTAGGTTATGAGGTTTATGTtgttaaactggaaaaaaaaatgtatactttTATTATGAATTCATGCATATATGAACTTGTGTGATTATGATTTAAGCCAGTTAGTTGCCCATCTAAAAACTGTTTCACCCTACACGCTATCAACTTAGACATAACTAACTTTAGTCTTTGGCTTGCCTAATTTCTGACATTAAATTGCACATTACTTTTTCCTCCACCAATAAGTAAGCCTTTTTTGTACGATTCCATTAAATGCAGGGTTCTGGACAGTCCGTGACATTTGGGCTGGAGAAGAAGTAAGCCTGTCCACTCTTAGGAATTTATAGGTTGGCCAAAGGAGCAGTGTCCTTTCCTGTAAGCATAATactgaacattttataaaatgcatacaCCAAACAATAGCTCTAAATTATACacaataaattaatcaacagtttCTATCTTGACATATGATTACCTGCATATTCCTGTGGAACACTCATAGTTATTCTGGCAGTATGCCCCATGGGGTTTAGTACCCATGATTCTCCAAAGGGGCGTCATACGGGCCATTCTCCTGAGTGACCTCTGAACTCCCTGCACAGAGCCTGAGGCGGCCTCCATCTCTGGAACAGGACTGGAAGCCACCTAAAcgtatacacCTGTTGAATGAGCACCATAAGCACCAAGCACCAGGCTGCAACAGCTTTTCTGCTGAAATGACTTTGCTCCTTCATGCTGAAAGAATGGGATTTAGCACAACTTTCTCAGAACTCTATCTGTAACCTCAGGCAACAGTGGCTATTGTCACTATCTCCAGCCTCATATACTTTCCAGTCACCACAGAGACACCCAGTCTGCCAGGCTTCACCTCGATCTCTCTTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU77679 True 1751 lncRNA 0.37 2 16592447 16594457

Neighbor

gene id symbol gene type direction distance location
zpax4 LOC108268120 coding upstream 101964 16470260 ~ 16490483 (+)
si:dkey-19b23.8 LOC108268122,LOC108434612,LOC103044025,LOC107683552,LOC107707061,LOC105907161 coding upstream 127219 16460591 ~ 16465228 (+)
chd3 chd3,LOC107738011 coding upstream 173517 16371997 ~ 16418930 (+)
dnajc3b LOC108267637,LOC108434608,LOC107707053,LOC107683555,LOC107702051 coding upstream 226256 16356241 ~ 16366191 (+)
cldn15a cldn15,LOC103041259,LOC108434589 coding upstream 236484 16352761 ~ 16355963 (+)
shroom4 shroom4,LOC107588210,LOC104951873 coding downstream 11239 16605696 ~ 16648129 (+)
cskmt mettl12 coding downstream 59364 16653821 ~ 16655884 (+)
krcp LOC108267668,LOC108434626 coding downstream 75000 16669457 ~ 16674227 (+)
mark2b mark2 coding downstream 80978 16675435 ~ 16715097 (+)
naa40 naa40,LOC107749810,LOC107691908,LOC107750594,LOC107668433 coding downstream 141610 16736067 ~ 16745357 (+)
G65580 NA non-coding upstream 14710 16569687 ~ 16577737 (+)
G65542 NA non-coding upstream 77606 16514637 ~ 16514841 (+)
G65495 NA non-coding upstream 149547 16431945 ~ 16442900 (+)
G65395 NA non-coding upstream 161761 16430461 ~ 16430686 (+)
G65382 NA non-coding upstream 200084 16392129 ~ 16392363 (+)
G65643 NA non-coding downstream 82072 16676529 ~ 16677366 (+)
G65644 NA non-coding downstream 129438 16723895 ~ 16729352 (+)
G65654 NA non-coding downstream 157403 16751860 ~ 16752090 (+)
LOC113539905 NA non-coding downstream 163770 16758227 ~ 16763461 (+)
LOC113540740 NA non-coding downstream 166062 16760519 ~ 16760583 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other upstream 221490 16367956 ~ 16370957 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other upstream 273281 16310213 ~ 16319166 (+)
LOC113540079 sh3tc1 other upstream 552463 16023194 ~ 16039984 (+)
zgc:194930 LOC108268002 other upstream 1933511 14632030 ~ 14658936 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other upstream 2323107 14255744 ~ 14269340 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other downstream 741040 17335497 ~ 17401388 (+)
LOC113539940 NA other downstream 1015035 17609492 ~ 17620079 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 1405701 18000158 ~ 18010962 (+)
frem1a frem1 other downstream 1518976 18113433 ~ 18143631 (+)
G66492 LOC108267609,LOC108437090 other downstream 1602855 18197312 ~ 18208564 (+)

Expression


Co-expression Network