leap2 (LOC100304644)


Basic Information

Item Value
gene id leap2
gene name LOC100304644
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16592562 ~ 16594505 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU77696
GAGATCGAGGTGAAGCCTGGCAGACTGGGTGTCTCTGTGGTGACTGGAAAGTATATGAGGCTGGAGATAGTGACAATAGCCACTGTTGCCTGAGGTTACAGATAGAGTTCTGAGAAAGTTGTGCTAAATCCCATTCTTTCAGCATGAAGGAGCAAAGTCATTTCAGCAGAAAAGCTGTTGCAGCCTGGTGCTTGGTGCTTATGGTGCTCATTCAACAGGTGGCTTCCAGTCCTGTTCCAGAGATGGAGGCCGCCTCAGGCTCTGTGCAGGGAGTTCAGAGGTCACTCAGGAGAATGGCCCGTATGACGCCCCTTTGGAGAATCATGGGTACTAAACCCCATGGGGCATACTGCCAGAATAACTATGAGTGTTCCACAGGAATATGCAGGAAAGGACACTGCTCCTTTGGCCAACCTATAAATTCCTAAGAGTGGACAGGCTTACTTCTTCTCCAGCCCAAATGTCACGGACTGTCCAGAACCCTGCATTTAATGGAATCGTACAAAAAAGGCTTACTTATTGGTGGAGGAAAAAGTAATGTGCAATTTAATGTCAGAAATTAGGCAAGCCAAAGACTAAAGTTAGTTATGTCTAAGTTGATAGCGTGTAGGGTGAAACAGTTTTTAGATGGGCAACTAACTGGCTTAAATCATAATCACACAAGTTCATATATGCATGAATTCATAATAaaagtatacatttttttttccagtttaacaACATAAACCTCATAACCTACAGTATAATACACTACGTGTATACTAttgtgctttattattattattattgttattattttatttaatattcaattttATCACATACTGTGCACATATCAGATTTTGGGTGGTGCtagtgatggtgtgatggatAAAATACAGCTAGAGTTGGTTATCTAAACACATACTGAGCCTTGAACTAGGCTGTTTCTGGAAGACCAGCTCTTGGTATTAGATCACGTAATGCCTGGATGCTGCACAAGTAGAGCTGGCAGCAGGTCGCATGTACAGCCTGTGTAGACTTTCAACCCGAGTGTCATTGAACTACAGATATGCttcagcagaaagagagagagaaagtgtgattAACAGTGCAAAGATTAAAGGCCTTAGTTGAATGAATTAAGGTACTGTTATTGCAGTTGCACAGCTTACTTCTGTTTCCTGATGTTTTAGTGCTTTTTTTATGTGGAAAACTTTTTCtggctttttatttatgtaagtgCTGATACAGACCTGACATTTGTCATACATCTCACATAACACTGTTAGAATATTCAAGATTCTTCTGCTGgataatctatttattatatttgattattttgtatGCTTCAGTGTATGCTTTTGAGTGACTGAGAAAATGTTCTGAAACTGTTACCTTAGATGTTTAGTGACATCATTACTGAATGTATGAGTGTATTACTGAATGTATGAGAGTTGCTTTTG
>XM_026936997.2
TGATGTCACAACTGGGTAcaaaaaggcagagagagacagggagggaaGCAAAGAGAGATCGAGGTGAAGCCTGGCAGACTGGGTGTCTCTGTGGTGACTGGAAAGTATATGAGGCTGGAGATAGTGACAATAGCCACTGTTGCCTGAGGTTACAGATAGAGTTCTGAGAAAGTTGTGCTAAATCCCATTCTTTCAGCATGAAGGAGCAAAGTCATTTCAGCAGAAAAGCTGTTGCAGCCTGGTGCTTGGTGCTTATGGTGCTCATTCAACAGGTGGCTTCCAGTCCTGTTCCAGAGATGGAGGCCGCCTCAGGCTCTGTGCAGGGAGTTCAGAGGTCACTCAGGAGAATGGCCCGTATGACGCCCCTTTGGAGAATCATGGGTACTAAACCCCATGGGGCATACTGCCAGAATAACTATGAGTGTTCCACAGGAATATGCAGGAAAGGACACTGCTCCTTTGGCCAACCTATAAATTCCTAAGAGTGGACAGGCTTACTTCTTCTCCAGCCCAAATGTCACGGACTGTCCAGAACCCTGCATTTAATGGAATCGTACAAAAAAGGCTTACTTATTGGTGGAGGAAAAAGTAATGTGCAATTTAATGTCAGAAATTAGGCAAGCCAAAGACTAAAGTTAGTTATGTCTAAGTTGATAGCGTGTAGGGTGAAACAGTTTTTAGATGGGCAACTAACTGGCTTAAATCATAATCACACAAGTTCATATATGCATGAATTCATAATAaaagtatacatttttttttccagtttaacaACATAAACCTCATAACCTACAGTATAATACACTACGTGTATACTAttgtgctttattattattattattgttattattttatttaatattcaattttATCACATACTGTGCACATATCAGATTTTGGGTGGTGCtagtgatggtgtgatggatAAAATACAGCTAGAGTTGGTTATCTAAACACATACTGAGCCTTGAACTAGGCTGTTTCTGGAAGACCAGCTCTTGGTATTAGATCACGTAATGCCTGGATGCTGCACAAGTAGAGCTGGCAGCAGGTCGCATGTACAGCCTGTGTAGACTTTCAACCCGAGTGTCATTGAACTACAGATATGCttcagcagaaagagagagagaaagtgtgattAACAGTGCAAAGATTAAAGGCCTTAGTTGAATGAATTAAGGTACTGTTATTGCAGTTGCACAGCTTACTTCTGTTTCCTGATGTTTTAGTGCTTTTTTTATGTGGAAAACTTTTTCtggctttttatttatgtaagtgCTGATACAGACCTGACATTTGTCATACATCTCACATAACACTGTTAGAATATTCAAGATTCTTCTGCTGgataatctatttattatatttgattattttgtatGCTTCAGTGTATGCTTTTGAGTGACTGAGAAAATGTTCTGAAACTGTTACCTTAGATGTTTAGTGACATCATTACTGAATGTATGAGTGTATTACTGAATGTATGAGAGTTGCTTTTGTGTATGCTACATATGATGTCTGAATGAAATaatattaactaaataaaagttttattatcAAACATA

Function

NR:

description
liver-expressed antimicrobial peptide 2 isoform A precursor

GO:

id name namespace
GO:0042742 defense response to bacterium biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU77696 False 1445 lncRNA 0.39 3 16592628 16594451
XM_026936997.2 True 1565 mRNA 0.39 3 16592562 16594505

Neighbor

gene id symbol gene type direction distance location
phka1a phka1,phka1a,LOC108267555,LOC107707917,LOC107702224,LOC107711571 coding downstream 8029 16566064 ~ 16584533 (-)
LOC113539955 LOC108267556 coding downstream 28425 16552388 ~ 16564137 (-)
LOC117596996 NA coding downstream 56676 16528806 ~ 16535886 (-)
zgc:103586 cda,zgc:103586,LOC108267558,LOC108434617,LOC105907191,LOC107597094,LOC107683547,LOC104927619 coding downstream 77714 16506973 ~ 16514848 (-)
LOC113540033 NA coding downstream 88013 16498973 ~ 16504549 (-)
otub1b otub1,LOC106608596 coding upstream 54680 16649185 ~ 16653787 (-)
fam113 LOC108268071,LOC108434623,LOC107741458 coding upstream 61435 16655940 ~ 16661187 (-)
adad2 LOC108267669 coding upstream 68624 16663129 ~ 16669417 (-)
rcor2 rcor2,LOC107588183,LOC107668449,LOC107749809 coding upstream 120700 16715205 ~ 16726855 (-)
arl2 arl2,LOC107588185,LOC107668402 coding upstream 168361 16762866 ~ 16768038 (-)
G65508 NA non-coding downstream 140670 16451677 ~ 16451892 (-)
G65494 NA non-coding downstream 161044 16431136 ~ 16431518 (-)
G65493 NA non-coding downstream 163204 16429143 ~ 16429358 (-)
G65491 NA non-coding downstream 165155 16427201 ~ 16427407 (-)
G65472 LOC108267266,LOC107595290,LOC107702060,LOC107707052,LOC107738084,LOC108434590,LOC105907155 non-coding downstream 219415 16369532 ~ 16373147 (-)
G65700 NA non-coding upstream 11502 16606007 ~ 16606592 (-)
G65715 NA non-coding upstream 80755 16675260 ~ 16684591 (-)
LOC117597072 NA non-coding upstream 134186 16728691 ~ 16735897 (-)
G65718 NA non-coding upstream 141648 16736153 ~ 16737913 (-)
G65722 NA non-coding upstream 208690 16803195 ~ 16804254 (-)
tnfsf12 tnfsf12 other downstream 165938 16419164 ~ 16426624 (-)
acox3 acox3 other downstream 520870 16054528 ~ 16071692 (-)
smim20 NA other downstream 600577 15973579 ~ 15991985 (-)
tbc1d19 tbc1d19,LOC107660707 other downstream 688207 15879471 ~ 15904355 (-)
G64436 NA other downstream 2348881 14232809 ~ 14243681 (-)
bmp15 LOC108267203 other upstream 9304 16603809 ~ 16605717 (-)
G66053 NA other upstream 806089 17400594 ~ 17402464 (-)
rnaseka LOC108267746 other upstream 844972 17439477 ~ 17444188 (-)
G66281 NA other upstream 999243 17593748 ~ 17634868 (-)
map11 c7h7orf43,cunh7orf43,si:dkey-3k24.5,LOC107687048,LOC107594676,LOC107754664,LOC107561780,LOC105895567 other upstream 1197721 17792226 ~ 17839915 (-)

Expression


Co-expression Network