G65643


Basic Information

Item Value
gene id G65643
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16676529 ~ 16677366 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU77739
gtgtgtgtgtgtgtgtgtgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtgtgtgtatgtatggtaAGTGACTGAAGACATATAGATTATTAAATGCCTGCTCCCAGTCAGATTTCCCTTGGTacatagtgtatatatacacttgtGTGTATACAAGTACAAAAAGACTAATAATCTAATGCATAATtcaatactaatactaattctaattaatgctaattcaatatgtgtgtgtatatatgtacatatgtgtgtatgtatggtaAGTGACTGAAGCTAACAAAATGGTGCGGAACTAAGATCAGTTAGtcaaaaaatgacaaagcacctttttatttttaatctgataAAGAGATGCCATATCAGTACTGACGTTTATCAACATGTTTCTGAAGACGACTATGTACCAAGGGAAATAAAAGTCTTTCTTGCTTGTTCTCTCTTCCTATGGCTGAGCCACATTACTCAAAATGAAACAGTGTGCAGTATACGTGTGTCTGTCTCATCTCATTTTTATCTCCAGTCATATTACAACGTCATAAACTGACAAGCTCTTTCAACATTTCCTGTGTGGAGTTTGAACtacaggaaggaggaggagaattTCTGTGCTCATTGATTACTAACGTTAATACGCCTGACTGAATAGTGTCTAATGAGAGGTATGGTGTATCAGAGCTTAGTGATTTAATGAAACAAGAgctgcaggctttttttttcttcctccttctcttcccCTATTTCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU77739 True 778 lncRNA 0.33 2 16676529 16677366

Neighbor

gene id symbol gene type direction distance location
krcp LOC108267668,LOC108434626 coding upstream 2302 16669457 ~ 16674227 (+)
cskmt mettl12 coding upstream 20645 16653821 ~ 16655884 (+)
shroom4 shroom4,LOC107588210,LOC104951873 coding upstream 28400 16605696 ~ 16648129 (+)
zpax4 LOC108268120 coding upstream 186046 16470260 ~ 16490483 (+)
si:dkey-19b23.8 LOC108268122,LOC108434612,LOC103044025,LOC107683552,LOC107707061,LOC105907161 coding upstream 211301 16460591 ~ 16465228 (+)
naa40 naa40,LOC107749810,LOC107691908,LOC107750594,LOC107668433 coding downstream 58701 16736067 ~ 16745357 (+)
b3gat3 b3gat3,LOC107750592,LOC107691906 coding downstream 69332 16746698 ~ 16750124 (+)
sb:cb1058 LOC108267120 coding downstream 74771 16752137 ~ 16755407 (+)
batf2 batf2 coding downstream 95033 16772399 ~ 16776829 (+)
ppp2r5b ppp2r5b,LOC108267535,LOC107749805,LOC107668366,LOC107588189 coding downstream 99528 16776894 ~ 16804016 (+)
G65601 NA non-coding upstream 82072 16592447 ~ 16594457 (+)
G65580 NA non-coding upstream 98792 16569687 ~ 16577737 (+)
G65542 NA non-coding upstream 161688 16514637 ~ 16514841 (+)
G65495 NA non-coding upstream 233629 16431945 ~ 16442900 (+)
G65395 NA non-coding upstream 245843 16430461 ~ 16430686 (+)
G65644 NA non-coding downstream 46529 16723895 ~ 16729352 (+)
G65654 NA non-coding downstream 74494 16751860 ~ 16752090 (+)
LOC113539905 NA non-coding downstream 80861 16758227 ~ 16763461 (+)
LOC113540740 NA non-coding downstream 83153 16760519 ~ 16760583 (+)
LOC113540741 NA non-coding downstream 83383 16760749 ~ 16760819 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other upstream 305572 16367956 ~ 16370957 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other upstream 357363 16310213 ~ 16319166 (+)
LOC113540079 sh3tc1 other upstream 636545 16023194 ~ 16039984 (+)
zgc:194930 LOC108268002 other upstream 2017593 14632030 ~ 14658936 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other upstream 2407189 14255744 ~ 14269340 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other downstream 658131 17335497 ~ 17401388 (+)
LOC113539940 NA other downstream 932126 17609492 ~ 17620079 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 1322792 18000158 ~ 18010962 (+)
frem1a frem1 other downstream 1436067 18113433 ~ 18143631 (+)
G66492 LOC108267609,LOC108437090 other downstream 1519946 18197312 ~ 18208564 (+)

Expression


Co-expression Network