bmp15 (LOC108267203)


Basic Information

Item Value
gene id bmp15
gene name LOC108267203
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16603809 ~ 16605717 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU77801
ATTCAATATGGCGgcagtaaatatatatttattcccACAGAAGCGAGCGCAGTTTGAAGCAGGTGCGTGTCTCAGGTGATTGACGTCGCGTCGCTGACGTCAGCAGGCACGGACACGCTGAGGATGTTAATTGAGAGGCTGCAGAAAGGTTTGTCAAACGGCAGTCAGGTGACTTTGTTTGACGATGGTAGCCTCGCCGGTTGTACTCCCCCGTGCCAGAAGTTAAAGATGAAGGCCGCCGGCAGTCATGGCTTCCTCAGACTTTGTGTACTGTcgtgtttctttttgttgttgccCGCGTTCACGTGCGCGGCCGATAAAATGGCCTTTTCCCCGTCACACCTCGGGGTGCTGGCGACAGAACAGAGTCGCCGAAAAAGCCACCCCAAACAGAGAAACCCCAACAGTAACGCGCTTTCGAAAAAACAAACGGAGGACCAAAGTCTGCAGTTCATGTGGAGTCTGTATAGGAAAGCGGCTAATGTAGACGGCAGGCCGAAACAGCGCAGATTGTTTGGGTCCAACACCGTCAGGTTGATTCGTGCTTCCGTCACCGGCAAGCGCTTCCATTCCTCATCAAATGACCTGCTGTATACTTACACTGTGCAATATGAACTGGAAAACCTCCCACTGAGCAAACTAAACAGGGCATCTTTCATTCACCTGAGGTCACCTGTGGCATCATACCCTCCGTTCATGTGTGAGGCCAGAGTCGCTTCCTCACAGCATGCTAACGACGCCGATGTTGTCATTCTGGGCCCTCAGAGCATGTGGACTGAATCGGATGTCACATCCCGTGTGTCTCTGTTTAAAGGCAGCCTGTTTGTCCTCTATGTTCAGTACAAGTGCTGGGAATCTGGCCCGGTTCATTCTGTTGCAAGACACAGGACACGCAAGAGACATTTCCCACCGCAAAACCACTTGAGAGCCCCTGCCTTGCTTCTCTTCTTGGAAGAAGAGGGACATCCTATGGAATGGGCAAAGTATGTCAAAGCCACTTCTCACACTGGCTCAAGGTTGCGCCGGTCCAAAGAACCCGGCAGCATCGGTTCTGACATTCCCAACTACAAGCGGTCCAAAAACAGTGTGGGCAAGAACCAGTGCAAGCTCCACTCATACCGTGTGACCTTCCGTGACCTCGGGTGGGATCACTGGATCATTGCGCCCCCTATGTACAACCCTCGCTACTGCATGGGCGACTGCCCACGCATCCTGCACTATGGCTACAACTCACCCAACCATGCCATCGTCCAGACTGTCATCAGTGAGCTCGGTGTTGCCGACATCCCTCTACCATCCTGTGTGCCT
>XM_026937053.2
GTCGCTGACGTCAGCAGGCACGGACACGCTGAGGATGTTAATTGAGAGGCTGCAGAAAGGTTTGTCAAACGGCAGTCAGGTGACTTTGTTTGACGATGGTAGCCTCGCCGGTTGTACTCCCCCGTGCCAGAAGTTAAAGATGAAGGCCGCCGGCAGTCATGGCTTCCTCAGACTTTGTGTACTGTcgtgtttctttttgttgttgccCGCGTTCACGTGCGCGGCCGATAAAATGGCCTTTTCCCCGTCACACCTCGGGGTGCTGGCGACAGAACAGAGTCGCCGAAAAAGCCACCCCAAACAGAGAAACCCCAACAGTAACGCGCTTTCGAAAAAACAAACGGAGGACCAAAGTCTGCAGTTCATGTGGAGTCTGTATAGGAAAGCGGCTAATGTAGACGGCAGGCCGAAACAGCGCAGATTGTTTGGGTCCAACACCGTCAGGTTGATTCGTGCTTCCGTCACCGGCAAGCGCTTCCATTCCTCATCAAATGACCTGCTGTATACTTACACTGTGCAATATGAACTGGAAAACCTCCCACTGAGCAAACTAAACAGGGCATCTTTCATTCACCTGAGGTCACCTGTGGCATCATACCCTCCGTTCATGTGTGAGGCCAGAGTCGCTTCCTCACAGCATGCTAACGACGCCGATGTTGTCATTCTGGGCCCTCAGAGCATGTGGACTGAATCGGATGTCACATCCCGTGTGTCTCTGTTTAAAGGCAGCCTGTTTGTCCTCTATGTTCAGTACAAGTGCTGGGAATCTGGCCCGGTTCATTCTGTTGCAAGACACAGGACACGCAAGAGACATTTCCCACCGCAAAACCACTTGAGAGCCCCTGCCTTGCTTCTCTTCTTGGAAGAAGAGGGACATCCTATGGAATGGGCAAAGTATGTCAAAGCCACTTCTCACACTGGCTCAAGGTTGCGCCGGTCCAAAGAACCCGGCAGCATCGGTTCTGACATTCCCAACTACAAGCGGTCCAAAAACAGTGTGGGCAAGAACCAGTGCAAGCTCCACTCATACCGTGTGACCTTCCGTGACCTCGGGTGGGATCACTGGATCATTGCGCCCCCTATGTACAACCCTCGCTACTGCATGGGCGACTGCCCACGCATCCTGCACTATGGCTACAACTCACCCAACCATGCCATCGTCCAGACTGTCATCAGTGAGCTCGGTGTTGCCGACATCCCTCTACCATCCTGTGTGCCTTACAAATACAAACCTATCAGCGTGCTGATGATGGAAAAGAATGGCAGCATTGTCTATAAAGAATATGAAGACATGATTGCAGAATCCTGCACCTGTAGATGACTGTGGGTTTGAAATACAACCGGATGTTGAAGAACTGAATAAAATGGACTTCTATGCAGTTCTTCCACCACTTTTGACCTGCTGCTGCCATCTGCTGCCCAGAGCTAATCGATTTTTTTTGAAGGTATGCTGTTGGAGTGTGAAGCAATTATTGCCTGATGCCTGATGGGTTAAAAGCCACCAACTGTGAcaaacat

Function

NR:

description
bone morphogenetic protein 15-like

GO:

id name namespace
GO:0001556 oocyte maturation biological_process
GO:0060283 negative regulation of oocyte development biological_process
GO:0005576 extracellular region cellular_component

KEGG:

id description
K05498 BMP15, GDF9B; bone morphogenetic protein 15

RNA

RNA id representative length rna type GC content exon number start site end site
TU77801 False 1308 TUCP 0.53 2 16604108 16605717
XM_026937053.2 True 1518 mRNA 0.51 2 16603809 16605628

Neighbor

gene id symbol gene type direction distance location
phka1a phka1,phka1a,LOC108267555,LOC107707917,LOC107702224,LOC107711571 coding downstream 19276 16566064 ~ 16584533 (-)
LOC113539955 LOC108267556 coding downstream 39672 16552388 ~ 16564137 (-)
LOC117596996 NA coding downstream 67923 16528806 ~ 16535886 (-)
zgc:103586 cda,zgc:103586,LOC108267558,LOC108434617,LOC105907191,LOC107597094,LOC107683547,LOC104927619 coding downstream 88961 16506973 ~ 16514848 (-)
LOC113540033 NA coding downstream 99260 16498973 ~ 16504549 (-)
otub1b otub1,LOC106608596 coding upstream 43468 16649185 ~ 16653787 (-)
fam113 LOC108268071,LOC108434623,LOC107741458 coding upstream 50223 16655940 ~ 16661187 (-)
adad2 LOC108267669 coding upstream 57412 16663129 ~ 16669417 (-)
rcor2 rcor2,LOC107588183,LOC107668449,LOC107749809 coding upstream 109488 16715205 ~ 16726855 (-)
arl2 arl2,LOC107588185,LOC107668402 coding upstream 157149 16762866 ~ 16768038 (-)
G65508 NA non-coding downstream 151917 16451677 ~ 16451892 (-)
G65494 NA non-coding downstream 172291 16431136 ~ 16431518 (-)
G65493 NA non-coding downstream 174451 16429143 ~ 16429358 (-)
G65491 NA non-coding downstream 176402 16427201 ~ 16427407 (-)
G65472 LOC108267266,LOC107595290,LOC107702060,LOC107707052,LOC107738084,LOC108434590,LOC105907155 non-coding downstream 230662 16369532 ~ 16373147 (-)
G65700 NA non-coding upstream 290 16606007 ~ 16606592 (-)
G65715 NA non-coding upstream 69543 16675260 ~ 16684591 (-)
LOC117597072 NA non-coding upstream 122974 16728691 ~ 16735897 (-)
G65718 NA non-coding upstream 130436 16736153 ~ 16737913 (-)
G65722 NA non-coding upstream 197478 16803195 ~ 16804254 (-)
leap2 LOC100304644 other downstream 9304 16592562 ~ 16594505 (-)
tnfsf12 tnfsf12 other downstream 177185 16419164 ~ 16426624 (-)
acox3 acox3 other downstream 532117 16054528 ~ 16071692 (-)
smim20 NA other downstream 611824 15973579 ~ 15991985 (-)
tbc1d19 tbc1d19,LOC107660707 other downstream 699454 15879471 ~ 15904355 (-)
G66053 NA other upstream 794877 17400594 ~ 17402464 (-)
rnaseka LOC108267746 other upstream 833760 17439477 ~ 17444188 (-)
G66281 NA other upstream 988031 17593748 ~ 17634868 (-)
map11 c7h7orf43,cunh7orf43,si:dkey-3k24.5,LOC107687048,LOC107594676,LOC107754664,LOC107561780,LOC105895567 other upstream 1186509 17792226 ~ 17839915 (-)
LOC113540242 adamtsl1 other upstream 2444433 19050150 ~ 19155221 (-)

Expression


Co-expression Network