LOC117597208


Basic Information

Item Value
gene id LOC117597208
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17080164 ~ 17095201 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU77958
CATTCACCTGCTTCCTGTTACCACAAAGGTATTTAAACCATAGAAGTACAACATCTAGATGCAAAATCtaattacatactgtacattagtgCCCTTGCCTTTTTAGCAGGGGCAAGAATCCCTCTTAAGTCAGTGCAATTTTAAGGAGAGAAGCAGCTGtaagagctttatcctggtcgtGATGGTGGTGGATCCAGCCcttcccaggaacactggagACATTCTTCAGAAATGGAGCATAAAGACACGCCTGGCCGGATTACCGGACCAATGACAAGTACAAGTATCACCCACAAGCAGCGCTGTCTCCTGCCAGCACTTCCCTcagtttgatttattatttccaTTAAATGTGTCAAGTgggtctctttctttctattcatTCACAAACAAGAGCAAAAGAGGATCCACCCCATTTTAACAAACAATGTCACTCCTTTCCTGTTAAGCAGAGTTAAGATACCAAATAAAGAGCTTGTTTTACTCACATAGTGCTAGTTCATGTATGAG
>XR_004578115.1
GTACAACATCTAGATGCAAAATCtaattacatactgtacattagtgCCCTTGCCTTTTTAGCAGGGGCAAGAATCCCTCTTAAGTCAGTGCAATTTTAAGGAGAGAAGCAGCTGtaagagctttatcctggtcgtGATGGTGGTGGATCCAGCCcttcccaggaacactggagACATTCTTCAGAAATGGAGCATAAAGACACGCCTGGCCGGATTACCGGACCAATGACAAGTACAAGTATCACCCACAAGCAGCGCTGTCTCCTGCCAGCACTTCCCTcagtttgatttattatttccaTTAAATGTGTCAAGTgggtctctttctttctattcatTCACAAACAAGAGCAAAAGAGGATCCACCCCATTTTAACAAACAATGTCACTCCTTTCCTGTTAAGCAGAGTTAAG

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle

RNA

RNA id representative length rna type GC content exon number start site end site
TU77958 True 510 lncRNA 0.42 4 17080164 17095201
XR_004578115.1 False 414 lncRNA 0.43 4 17080215 17095156

Neighbor

gene id symbol gene type direction distance location
badb NA coding downstream 257013 16819404 ~ 16823151 (-)
LOC113539980 majin coding downstream 264375 16810684 ~ 16815789 (-)
gpha2 gpha2 coding downstream 272028 16805860 ~ 16808136 (-)
arl2 arl2,LOC107588185,LOC107668402 coding downstream 312126 16762866 ~ 16768038 (-)
rcor2 rcor2,LOC107588183,LOC107668449,LOC107749809 coding downstream 353309 16715205 ~ 16726855 (-)
dysf dysf coding upstream 7328 17102529 ~ 17179641 (-)
cd99l2 cd99l2 coding upstream 234346 17329547 ~ 17343282 (-)
zgc:92664 cssa04h17orf49,clg07h17orf49,LOC108267800,LOC108434657,LOC103038770,LOC107561866,LOC107594707,LOC107668195,LOC107678180,LOC105902403,LOC105027650 coding upstream 437964 17533165 ~ 17536773 (-)
ache ache,LOC108267799,LOC107668174,LOC107593784,LOC107750572,LOC107749789 coding upstream 445389 17540590 ~ 17553140 (-)
LOC113539922 snapc2 coding upstream 553029 17648230 ~ 17651920 (-)
G65809 NA non-coding downstream 142744 16937213 ~ 16937420 (-)
G65722 NA non-coding downstream 275910 16803195 ~ 16804254 (-)
G65718 NA non-coding downstream 342251 16736153 ~ 16737913 (-)
LOC117597072 NA non-coding downstream 344267 16728691 ~ 16735897 (-)
G65715 NA non-coding downstream 395573 16675260 ~ 16684591 (-)
G65984 NA non-coding upstream 159629 17254830 ~ 17309084 (-)
G66028 NA non-coding upstream 215186 17310387 ~ 17311060 (-)
G66056 NA non-coding upstream 307421 17402622 ~ 17403815 (-)
LOC113539942 NA non-coding upstream 351560 17446761 ~ 17453705 (-)
G66274 NA non-coding upstream 476130 17571331 ~ 17637986 (-)
bmp15 LOC108267203 other downstream 474447 16603809 ~ 16605717 (-)
leap2 LOC100304644 other downstream 485659 16592562 ~ 16594505 (-)
tnfsf12 tnfsf12 other downstream 653540 16419164 ~ 16426624 (-)
acox3 acox3 other downstream 1008472 16054528 ~ 16071692 (-)
smim20 NA other downstream 1088179 15973579 ~ 15991985 (-)
G66053 NA other upstream 305393 17400594 ~ 17402464 (-)
rnaseka LOC108267746 other upstream 344276 17439477 ~ 17444188 (-)
G66281 NA other upstream 498547 17593748 ~ 17634868 (-)
map11 c7h7orf43,cunh7orf43,si:dkey-3k24.5,LOC107687048,LOC107594676,LOC107754664,LOC107561780,LOC105895567 other upstream 697025 17792226 ~ 17839915 (-)
LOC113540242 adamtsl1 other upstream 1954949 19050150 ~ 19155221 (-)

Expression


Co-expression Network