arrb2b (arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939)


Basic Information

Item Value
gene id arrb2b
gene name arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17335497 ~ 17401388 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU78081
CTGCAAACCTGGCAGCTATAACCATAAGCAAGAACCATGCAGGTGTGTTGATTATGTGTTTTATACAGCAGCAGGACAGAATCATGGTGGGTGGTTTATTAGTAGGACGTGCTTCCCACGTTACACAAGACTATAATCAAAGCCAGACTGCTGATTAGACCTTATTAATGGCAAAGGTGAATTTCAAATCTGATGCAGGAGAAAGTCCTTTCAACATCATAGCAGACAGATGCAAGAGGGAAGTGAGATACAGATTTCATTCCCATGACAGAACGCGTCACCcataagcagtgtgtgttcCTTACCACCGTTTCCACCATGGGTGCTGGGCCTGTTGTCACCTCCTCCAAAGTCTTTGTCTGACAGGAACACAAGATGCCATGGAGTCCCCTCTAATTTCACTTTCACACTTCTTTCTCatacaagtcacttcactagcATTAGCATATTATCAGACTATTGTCTTCTTCATAAGTCACAAATGTAAAATGACTACAGAACAAATGCTGGCAACCAATAAACAAGCAAACTTTCCTTTGATCACCCCccccaattcccacccaccagtcagcTTTCCCCTATTGTACACTTGGATGAAAGAGCTATCTACCGTGTTCtgcatacataagctcacagatACCCCAATTACCCAGTattactgtgattgacaggggagatagagtatgccatccctcccacccataCAGCACGGCTAATAATTTTACTCCCTTAGCTCCCAGtgacggatggctgtggcatcgtccaGAGGTCACCAGTTTGAGcacaaatgcttttctgttgcacaaTTTGAGAACCTTATGTACCACTTTTAACATCTGAAAGCTTTAGTTGGACTTTtgatggctgttttttttttcaggcacaGTTTAGGTCCTGCCAAGGAACCAATTACTCATTCAGAGAGAATTCTTCTTCTGAAAAACTGCCCACTGTTTGGCTGATGTGATACCAGGTAGTTCAGTAGAATTAcagcataaaaataaagaaaataaagctcTTCTGACCAATTTATTCTGCTCTGCCACATTAGAGTCCTCTTCTTGACAAACTAAAACTGAGCTTTCAGGAAACTAGAAAAAAATCCTAAAGCATTGGTTTTAAAGCAGTGGTTTACAAAATAaggtgacaaaataaaaaaaacagcatgtggtTGTGGGCAGATTGTTCTTGCTGCCAGGCTGATCAGCACTAATGGCACTAATCCACGAGCATCACAATCACTGAACGTGTACTCTGACCACAGTTTCCAACCCTTGATACTGATGCCTGTCTAACTGAAGCTCCTGTATCTGTGCCCCAATAATAAGCCTCTTTCAAAATCACTTAGTTCTTAATTCCAGTTGTCATCTTGCCTGCTCAGCAGTTTATATATGCAACAGAGCATTGTAGGATGTTAACCGCTTAACTGTATCATACAGTATACTTGTGGAGAAGCATCTGTGCTTGTTATAGTTCCACGCttagttttcctttaatgtgtcactcatctgtattttgaaaaagtctgGCTAGCTGGTTCTAGCTTTCTCGAGCAGTGAAGTATAACGTGAAATGAAATGGATTTTCTGTTGTTTCATGGGAGTAAGCAGATTTTGGATATTTACAGCACTGCTAATTTTCTAACTGCACCATAAACACTGCACCAGTATATTCATCTTTAAGATGaattacacaaataaacactcaCCCTCTTGATTTTTCTTGTCATTTTCAGGAAGCAAAGCGTCAGCAAGGTTAAAGTCAGGTAGACCTAAGAGataagtgttatttattattgtgtgtgcatttttaggacatctgtgtaaatatataaatatgtaataacaatatatttctataacagtatCAAATAAGCCTGAAAAATATCACAGTGATACTAACACCTATTAATAAACCAATATGCATGATTATACCACTGTTGAATGCTCAGAATAGAATTTTTCAGAATagactgattaattttctataacagcacatctcattCTAAtccgttattgtttctatagtaacagctcattcatgggGACCTGTATGACGGATGCTCGCATAATTTAAGTCTaatgaaaaacagatttttaaaacgTGTTGCTCtggtgaagctttctgcaaggagacgtttatttaacaggAAAGCCACCAGGAAAGAAGACTTCTCGGTTatgtgacaagctgcaattgTTGTCTTATTTGCCTCAAGAAAGAGCAcaaatgagagacagaaaaagagaagctggtgagggaacgactttatagctgttataacgaaAATAAttacaagaactaacttgttattACTTGTAATTAGTAACTATAAAAGGACAAATGTATGacattagcaaattgctgtggtacaagaggaataaaacactgcactccctttcatgttttattcctttcttaataaataaacatacaagttacataaaatatgaaacaagGTGTACCACTTGATACAATGGTTGGGATAAAAGAGTGGATGTAGTGATGTGAGGCTGGCGTGCATGATTACAGTAAAGACAGAGAAGAGTGGAAATGATGGCTGAAGAGTGCACTTAAGCTTGCAGCCTGTAGATACTGAAACATGCATGCAGGTATCTGTCAGGTATTTCCCCTTCATGCCGAGCACTGAGTGCAGAAGCACTCAGCACGCTTAAGCACCCGTGTGACAGTGCGTGTTTCCGTGCTGtcatgtctttatttattttgccacatgtgtgttttttttttgatccatatcctgtctccacccctgtcttGTCACTGGTTGTCTCCCTTATGTGTCATGATCATTGTCACCTGTGTTCAGGTTGCCCTTGATTAGTTTATGTATTTAAACCCTCGTCTCTCTTTGTACGATGCGaagtattgttcagtgttttgcCTCCTGTTCATACCAAGCCTTGTTCAATGTTTTGACCTTGACTCCTGTTTTTTTTGACCTTTTTCTGTTCCCTAGTTCGCGTGTTTTGGATATCCATTGGCATAGCTGTTTGTAGATTGCCTGACCTTtgcatgtttaatatttacaagtTTTGACtcacgttttggatttgtctgcctgcctctctttAATAAACGCTTatactgcatttgcatcctTCTCAACTCGCAGTACATGACAGCAAAACACTGGTGATTGTACATGTAGTGAATTTATGGGCATGGGAGTAACACTGGAAAAAGGTCAATGGACACAAAACATAGAAAGAATGtttttctgacacttttctgAATCAAAACATTGATTCCCATCGAAAAGCTTTAAACTCAaagcattaaaggaaaaatggtGGCAGGTATATTACAGATAAGTGTCTTCCTTCATGTGCTTTGAATCTGCCTGTACaaatggacacacacagactcaggGACTATGAGTGGCTTCACCGAGGGACACggacaacacaatacacaccgGGCTTGTGAGGTGGGGCAGACGTGCGGAGGGGTCTGGAGGTTGTGCGGGGCAACAAAGCAGGCCGCACGGTTGGCCCAAAGAAATCAGCAAGGGTCTCCTCTGTCAGTAAAGGCTAGCAGGTTAGTAAGgttaaagacacacacaagaGTTGCTTTGTAGCTGAAGTGAGGATTAAAAAATGACTCAGCATTAGTGTTAGAAAGAGACCCACTGTGTATAAACAACATGAAAGGTACTTTGAACTGAGTGATTAAATGATGCACTGTTTTACACCAAGGCCCTTTAAAACAGTCAAGATTAATGGCTATGTCTATTATTATACAACAGGAAAATGTCTAGAATTTGCACTGGCTGTCTTTTTTACAGTGCATTCCTATAAGAATAATACTATCATAGTGTTTACACAATAGGGTCTTGGAGAGTACACCACCTTTGTATTCATGGCTACTGATTTGCACTCACCTGAAGGCAGCCCTGACATGAGTCAGACAGGGTGACATTGGTTTCAGCTTAAGACTAACTTGAAATTACTCAGCCTGTTCGTTAACCCATAAATCCACTTTTGATAATACCTTTTTGTGTCTGTCAGGTACTTAAGGGTCTCTGGGTCGTTTATGTGCAGGATAAGTGCTATAGCCCTGCTCGATATGGGACCACAAAAAATCAATGCATGCTGGCAGACAGAGCATGTTGTGATGCTGAGGAATAAGATCTGTGTCTATGTCAGAACTACACGCTGATTCCTAAAGAACTGCATGAATCAGTACAGGCCAAGCTTGAAAAGAAGCAGCTGGAAATAGGCAGTTAGAAAATGTcttgaaagaaaagagaaattgGGTTCATATTGATGACTCTCACCTTGTTTGGGTTTGGTCGTGGGCTTAACAGGGTCTTTGGGCTTAACAGGGTCTTTGGGCTTGACAGGGTCTTTGGGCTTGACAGGGTCTTTGGGCTTGACAGCAGGCTTTTCGGTAGGTTTATCAAAAAAAGTCTTCAAGAAGTCCAGCCCCAACTGCAAGCTTACAGTCTACTTGGGCAAAAGGGACTTTGTGGATCATCTAGATCATGTGGATCCAGTTGATGGAGTACTTTTGGTCGACCCAGAATACCTTAAAGACAGAAAAGTGTTTGTGACTCTGACGTGTGCATTTCGTTATGGCCGAGAGGATCTGGACGTGCTGGGATTGTCCTTCAGAAAGGACCTTTACATCTCCACCTTCCAGGCTTTTCCTCCACTGCCTGAGGAGCGCAAACCACTCAGCCGCCTGCAGGAGCGCCTGCTCAAAAAGCTCGGCCAGCACGCACACCCCTTCAACTTCACTaTTCCTCAGAATCTTCCCTgctcagtcactttacagccAGGACCAGAGGACACAGGCAAGGCATGCGGTGTAGACTTTGAGATCAGAGCTTTCTGTGCCAAATCTGTGGAGGAGAAGATTCACAAGAGGTGCAGCACTTTATCTTCATGCTCATGTACTTGCTGAGCGCAG
>XM_026936053.2
ATGTCAGTCACAGGAAGGAGGCCGGCCTTGGAGGCTGCTGTCAGAAGAGGCAGTCAAACAGAGGTTTCCGTCTCGGGACTGCGGGAAACTACCCTGAGAAAGAAGGAGCAGCGAGTCGCTGTGAGCGGGGAACCAGCCCGAGCCGAAGAGGGGAGCAGGAAGGCTTTACTTTCCGAGTGGCAGTCCGTTTCTTTTTAAAGACACCTTTTTTTCGGTTGAAGAAACAGGCCTTCGGAGATGGGCGACAAGGCGGGGACCAGAGTCTTCAAGAAGTCCAGCCCCAACTGCAAGCTTACAGTCTACTTGGGCAAAAGGGACTTTGTGGATCATCTAGATCATGTGGATCCAGTTGATGGAGTACTTTTGGTCGACCCAGAATACCTTAAAGACAGAAAAGTGTTTGTGACTCTGACGTGTGCATTTCGTTATGGCCGAGAGGATCTGGACGTGCTGGGATTGTCCTTCAGAAAGGACCTTTACATCTCCACCTTCCAGGCTTTTCCTCCACTGCCTGAGGAGCGCAAACCACTCAGCCGCCTGCAGGAGCGCCTGCTCAAAAAGCTCGGCCAGCACGCACACCCCTTCAACTTCACTaTTCCTCAGAATCTTCCCTgctcagtcactttacagccAGGACCAGAGGACACAGGCAAGGCATGCGGTGTAGACTTTGAGATCAGAGCTTTCTGTGCCAAATCTGTGGAGGAGAAGATTCACAAGAGAAACTCTGTGCGGCTGGTGATCCGTAAGGTGCAGTATGCTCCAGAGAAGCCAGGACCACAGCCTATGGTGGAGACCACACGCAGCTTCCTCATGTCTGACCGCTCCCTCCACCTGGAGGCTTCCCTTGACAAAGAGctctaCTACCATGGAGAACCCATCAGCGTCAACGTTCATGTCACCAACAACTCCACCAAAACTGTCAAACGAATCAAAATCTCAGTGCGACAGTATGCTGATATCTGTCTGTTTAGTACTGCACAGTACAAATGCCCCGTGGCTCAGGTAGAAGCCGATGATCAGGTGTCATCCAGCTCCACATTCTGTAAGGTGTACACACTCACCCCGACGCTGAGCAACAACCGAGAGAAGAGAGGTCTAGCACTGGACGGCAAACTCAAGCACGAGGACACAAACCTGGCCTCCAGCACCATTGTGAAGGATGCATCCAATAAAGAGGTTCTGGGTATCCTGGTGTCCTACAGAGTCAAAGTTAAACTGGTTGTCTCTCGTGGAGGTGACGTGGCAGTAGAACTTCCCTTCGTGCTGATGCACCCCAAGCCCTCTGAGCAGCCCAGCTCGAGACCACAGTCAACTGTGCCAGAGACGGATGCTCCTGTGGACACCAACCTGATAGAGTTTGAGACAAATAACTTCTCTCAGGATGATGACTTTGTGTTTGAGGACTTTGCGCGGCTGAGGCTGAAGGGAATGAAGGATGATAAAGATGAGGATGACCACTTCTGCTAACCCTGTGTGGAGAGAGGGAGCTGGATTGAAGGGGCTCTGAGTGTCAGTACTACTACACCACCATTCCACTGGGCCAACCTGAAAGAGCAGGACGCTCACCTGAGCgccttctctcctctcttttttttctttttctttttctttctcttgcccCTCTCCCTGTCCCTTTGCATCAGTGATGCTGTTGTctttagaccttttttttttttttttttttttttttttggaagctacTTTGTTCTTGTGTATGTGCATTagacagagaaaatgaaacCCAGTGAGAAAGGCAAAGAAAGCGGTGAGGTTAAACAGAACTGGTCAGGAATGTCTACGAAACATCATTGAACAGAGGGTCCATTAATTCAGGGGTATCTTTTTATCTAGTTTATATTTCCTCCCCACCCCCTTCCCCACTGTAAACTGAGTGGGCATTACTAGctttgtaatattgtaataacatAGGTAAAACATTACTTCAGTGTAGAGTATGACAGATAGGGAACATGAGCTTgagaattttatttctttatcagATTCAGTATAGACCACCAAGAGACTTTTTCTTTCAATGTtctagcattttattttatagctatGTAAAATGTATACATATCGCATGAACATAT

Function

symbol description
arrb2b Predicted to enable angiotensin receptor binding activity. Acts upstream of or within muscle organ development; regulation of receptor recycling; and regulation of signal transduction. Predicted to be active in cytoplasm. Is expressed in several structures, including alar plate midbrain region; axis; brain; vasculature; and ventral mesoderm. Orthologous to human ARRB2 (arrestin beta 2).
arrb2 Enables angiotensin receptor binding activity and ubiquitin protein ligase binding activity. Involved in several processes, including cellular protein metabolic process; desensitization of G protein-coupled receptor signaling pathway; and negative regulation of NF-kappaB transcription factor activity. Located in several cellular components, including cytosol; endocytic vesicle; and nucleoplasm. Biomarker of portal hypertension.

NR:

description
arrestin red cell-like

GO:

id name namespace
GO:0007517 muscle organ development biological_process
GO:0008589 regulation of smoothened signaling pathway biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78081 True 4932 lncRNA 0.41 7 17335497 17392798
XM_026936053.2 False 2096 mRNA 0.48 15 17351919 17401388

Neighbor

gene id symbol gene type direction distance location
mtmr1a mtmr1 coding upstream 5951 17308621 ~ 17329546 (+)
mtm1 mtm1,LOC107749798,LOC107677984,LOC107750584 coding upstream 27627 17279486 ~ 17307870 (+)
si:ch73-211e3.1 mamld1 coding upstream 60315 17208503 ~ 17275182 (+)
LOC113539921 NA coding upstream 146045 17185021 ~ 17189452 (+)
LOC113540460 cyp26b1,LOC108267534,LOC108434641,LOC103033177,LOC107588193,LOC107750587 coding upstream 374688 16939461 ~ 16960809 (+)
pelp1 pelp1,LOC108434651,LOC102787544,LOC105891152,LOC103362118 coding downstream 3965 17405353 ~ 17419302 (+)
alox12 alox15,LOC108267745,LOC108267744,LOC108434653 coding downstream 25281 17426669 ~ 17500896 (+)
si:dkey-6n21.12 LOC108267749 coding downstream 107037 17508425 ~ 17520166 (+)
si:dkey-6n21.13 LOC108267748,LOC108434655,LOC103038466 coding downstream 118888 17520276 ~ 17523339 (+)
LOC113539911 NA coding downstream 172202 17573590 ~ 17586296 (+)
G65663 NA non-coding upstream 564654 16770605 ~ 16770843 (+)
LOC113539905 NA non-coding upstream 572036 16758227 ~ 16763461 (+)
LOC113540742 NA non-coding upstream 573622 16761804 ~ 16761875 (+)
LOC113540744 NA non-coding upstream 573850 16761572 ~ 16761647 (+)
LOC113540743 NA non-coding upstream 574159 16761266 ~ 16761338 (+)
G65927 NA non-coding downstream 1171 17402559 ~ 17403879 (+)
G65933 NA non-coding downstream 9606 17410994 ~ 17502645 (+)
G65934 NA non-coding downstream 29689 17431077 ~ 17440372 (+)
LOC117597048 NA non-coding downstream 52058 17453446 ~ 17484922 (+)
G66124 NA non-coding downstream 175716 17577104 ~ 17578946 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other upstream 964540 16367956 ~ 16370957 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other upstream 1016331 16310213 ~ 16319166 (+)
LOC113540079 sh3tc1 other upstream 1295513 16023194 ~ 16039984 (+)
zgc:194930 LOC108268002 other upstream 2676561 14632030 ~ 14658936 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other upstream 3066157 14255744 ~ 14269340 (+)
LOC113539940 NA other downstream 208104 17609492 ~ 17620079 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 598770 18000158 ~ 18010962 (+)
frem1a frem1 other downstream 712045 18113433 ~ 18143631 (+)
G66492 LOC108267609,LOC108437090 other downstream 795924 18197312 ~ 18208564 (+)
G66864 NA other downstream 1455068 18856456 ~ 18858652 (+)

Expression


Co-expression Network