G65933


Basic Information

Item Value
gene id G65933
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17410994 ~ 17502645 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU78089
cttgttgatgagagagatgagaggagaatgaccagactggtcaccgaaactggacagttgaagtctggaaaaagaacagctgatcttttttctaatcttcaactgtccagtttctgtgagtcagtgcccatgatagcctcagattcctgttcttggctgacaggagtggaactcagtgtggtcttctgcgggtgtaacccatccacctcaatgttgaatgttttgtgcatgctgagatgcttttctactcaccccgggcgtaaagagtgattatttgagttactatatccttcctggcagtctggtcattctcctctgatctctctgatcaacaaggcgtttccactcacagaactgtcgctcactcagtgttttttgtttttcgcaaccattctgtgtaaactctagagactgctgtctctgaaattcccaggagttcagcagtttctgaaatactcaaaccagcccatctggcaccaacaaccattaaagtcacagagatcacactttttccccattctgatgtttgatgtgaacattaactgaagctcttatggaaaatgatttaatttcataCCTTTATTAATAGGTTAATCATTTATCTATTATCTATTTCTTAATTATCCTCAGTTAATCCTTCATTATAATCCATAGTCACAAAATTTAGGTGGGTAATCCGAAATCTAGTGTATCTGCTTCTTATCATTTAGACTTCTTGTGTGAGAAAGCAGGAAGATGTCCttgaaacatttattaaaaggCATAGAGGGAGGCCTACTCTAACAGGACTGATTTAAGATACCTGCAGGATGAGAAGCTACGGTCATGTCATGTCTTTTTATGTGTCATGAATAAGATAGGCTTGTGACCTGAGGCTTAGATGAAGTAGTTCTCACAAGTAGTTCTCACAGTCCTagtatttttagattttctcCATCTGTGTATTTCCTTTCCTGTTAATCATGTAATCATTTATGATCATTCATGTTaagtttaactttatttgaccAATAAGCATGAAGTTCTTAAGTTCTTCTGAAGTTTCCTGTAACCAATCATGAAACACTAGCCCTGTGCAGTGAACTATATAATTGAACACTTTGGTCGCTGGAGTTCTTCTCCCTGGCCGTGACAAGAATAAACATATTACTCTGGAGTCaactgtgtctctgtgagtTTGACTTCTATTTGTCTTCAGAAGGTCATATATTCTACGacactcttgacctgtatctgcatgattttatgcattgcgctgctgccacaagattggctgattagataactgcatgaatgtgcaggtgtacctaataaagtggatggtcaGTGTATACGCTTCAGATATGTTCTTCTTATGTTGTACAGATTATACTTTCAAAATCAATAAACTGGATATAAATAAAACTCCGTAATGCATGTAACTTCCAAGAAAAGATAGCCAGAGATATTAGGAACTACAAAGATGTTTAttcctgtaaataaataagtgttacAAATAAGATACTagatttttaacagtttatacaaaaataatattcacaCAAACAATTGTCGTTTCTactttgtattta

Function

GO:

id name namespace
GO:0009799 specification of symmetry biological_process
GO:0021532 neural tube patterning biological_process
GO:0009855 determination of bilateral symmetry biological_process
GO:0009888 tissue development biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0007389 pattern specification process biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78089 True 1571 lncRNA 0.37 2 17410994 17502645

Neighbor

gene id symbol gene type direction distance location
mtmr1a mtmr1 coding upstream 81448 17308621 ~ 17329546 (+)
mtm1 mtm1,LOC107749798,LOC107677984,LOC107750584 coding upstream 103124 17279486 ~ 17307870 (+)
si:ch73-211e3.1 mamld1 coding upstream 135812 17208503 ~ 17275182 (+)
LOC113539921 NA coding upstream 221542 17185021 ~ 17189452 (+)
LOC113540460 cyp26b1,LOC108267534,LOC108434641,LOC103033177,LOC107588193,LOC107750587 coding upstream 450185 16939461 ~ 16960809 (+)
si:dkey-6n21.12 LOC108267749 coding downstream 5780 17508425 ~ 17520166 (+)
si:dkey-6n21.13 LOC108267748,LOC108434655,LOC103038466 coding downstream 17631 17520276 ~ 17523339 (+)
LOC113539911 NA coding downstream 70945 17573590 ~ 17586296 (+)
LOC113539941 NA coding downstream 101662 17604307 ~ 17609478 (+)
LOC117597112 snapc2 coding downstream 114514 17617159 ~ 17620019 (+)
G65927 NA non-coding upstream 7115 17402559 ~ 17403879 (+)
G65938 NA non-coding upstream 38855 17357338 ~ 17372139 (+)
G65939 NA non-coding upstream 51425 17358486 ~ 17359569 (+)
G65663 NA non-coding upstream 640151 16770605 ~ 16770843 (+)
LOC113540742 NA non-coding upstream 649119 16761804 ~ 16761875 (+)
G66124 NA non-coding downstream 74459 17577104 ~ 17578946 (+)
G66128 NA non-coding downstream 90987 17593632 ~ 17634867 (+)
G66144 snapc2 non-coding downstream 146720 17649365 ~ 17651710 (+)
G66151 NA non-coding downstream 200589 17703234 ~ 17703455 (+)
G66159 NA non-coding downstream 237430 17740075 ~ 17747165 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other upstream 9606 17335497 ~ 17401388 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other upstream 1040037 16367956 ~ 16370957 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other upstream 1091828 16310213 ~ 16319166 (+)
LOC113540079 sh3tc1 other upstream 1371010 16023194 ~ 16039984 (+)
zgc:194930 LOC108268002 other upstream 2752058 14632030 ~ 14658936 (+)
LOC113539940 NA other downstream 106847 17609492 ~ 17620079 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 497513 18000158 ~ 18010962 (+)
frem1a frem1 other downstream 610788 18113433 ~ 18143631 (+)
G66492 LOC108267609,LOC108437090 other downstream 694667 18197312 ~ 18208564 (+)
G66864 NA other downstream 1353811 18856456 ~ 18858652 (+)

Expression


Co-expression Network