G65938


Basic Information

Item Value
gene id G65938
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17357338 ~ 17372139 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU78094
CAAACACATCTGTTATCTGAGACAGCTGAGCTGCCAGTAGGATAATATACTTCAGGACACTTCAggatctttttaaaataaaatctttgttGCTGTATAGAGCATTTGCAAATGTATGATTTTGGATGTTTCTACTCTGTAAAATTCTCAGTAGCAATTCCTAAGTTTTACAGAGACTCTTTCTTATAATTATGATGCCATGAAAACCGTAAGCTGAAAACCATTAGCCCCTTGCTTTGCTTAATCTGTCATGGAGACACAGGGAAAGAGAGCTTGAAATTGATAGATGCAAAGCAGTGAAGACGGAGAGACCTGCTTACTCGTCTAATCATCCAGCTTGGAATTTATTGGTTTGTTGCTTTGAGACCTTCCTCAGCTCTTAAGGATGCTTTAAACGCAAGATGCAATCCAATTACAGTGGTCCATTAGAGCAGTCACTATGGGTTTTGGCCtttgctcgtgtgtgtgtgtgtccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtttgtgcgtgtgcgTCCATGTGCACGTGTCCACAGCTGTGGCATTTTGCACACTTCATGTGAAACCACATGACTCTTTCAAAGCAATAATGAGAagatctcttctcttctgtagTTCTCAGCTCATatgtatttttcatatataatcTGGTCAAGAATTAAGCAGATACTGATAATAGTTAAAGATGTGAGTTTCAGTTTCTTGCAACTGAAATAGACAGTACTTTATGATCATTTTAGAACAAGTCAATAGCATGACCAAACTCATCATCTGGTTGAGACACTACACTCTCAAccagaaaatgtaaagtaaaggtGAAGGACACTTTCCAGAAGCTCTCAAATGACCAGGCTGTCTAAGATTTCACCCTGTTATCAAGAATCAAGGTTCAAAGCCTGATGATGCCCCATTGATCCGCAATCAGGGGTCCAGGAGCGACTTCAAATGAACTGTTTCTCTGTGTATAAATCCCTTTCTGAGTGATTAGCGCCCCCTAGCACCCTGCTGTATGCTTGGTGATGTATGAATTCAGTCTTCTTGTCCAAtgttaaaagagagagagctgtatCCTCACAGTGTCCAGGGACCAATTCCCTCACAAAAGTAGTGTTAAACAAAGTGGAAAATGGCAATCATGGCAAATTATATGTTTTCGCCCAGAAGCTCTTTAGCTCATtatgtatgaatatgaaaaagaataaaCTTCAAAGACACAGTGCTTGTGTGCACAGAACAGAGGAATTGTATGCCTAAGGGGTCAACTTATAAACCAAAACCTGTTATAAGACAAAGATCTTGAAATAAAATTTAGAGAGGAAGCCAATACAGATGAACAGAAGACATTAAAGGGGGTTTGTTTGCTGCTTAATGCTGTTCTCTGGAAGTGTTGTGAGttcataattaaaaattgttcatatttttgtaaattcatatttttgtaaaatcatatttatgtaCCACGAAAACCCCTTTAATCTGAGATGCTGCAGTCATTGTTTATGTGGTTACTGCATTCAGAACTGTGGTTGTTCTCGATATTGCAGTGATTTAAACCCAAAAATCTTAATATTAACCTGATTTTAACCAATAAACACAAATTTCGGACAAAaatccttcatcagctgtgtgaGTAAATTAAAGGATCTGTTAGTGTGGAATGCTAAGAACGAGACGCATTCAGAGCAATCAAAagaaattataaaacaaaatgtttataacTTTCATGTTAATAGTTCAAAAGGTGAGCTCGActctacactcactgagcacatTATTAGGagcactatactaatactgggtaaaCCTTCgctctcaaaacagcttcaattcttcatggcatggattccacaagacgttggaaacattcctttgagagtctggtccatgttgacatgattgcatcacgcagttcctgcagatttttcaggtgcactttcatgctgtgaatctcctgttctaccacatcccaaaggtgttctactggattcagatctggtgagaaggccactgaagaacactgaactcattgtcatgttttgctttgtgacattgtgacagggtgcattatcatgctagaaatagccattagaagatgggtaaattgtgaccatgaagggatgcacatgattAGCAACAAtgctcaaataggctgtggcatacaagcgatgattgattggtattaacgggcccaaaatatgccaagaaaacattccccacaccattacaccacctccaccagcctggactgttgaacCAAcccaggttgggtccatggattcatgctgttggtgccataTTCTGAccttaccatctgtgtgcctcagc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78094 True 2348 lncRNA 0.40 2 17357338 17372139

Neighbor

gene id symbol gene type direction distance location
mtmr1a mtmr1 coding upstream 27792 17308621 ~ 17329546 (+)
mtm1 mtm1,LOC107749798,LOC107677984,LOC107750584 coding upstream 49468 17279486 ~ 17307870 (+)
si:ch73-211e3.1 mamld1 coding upstream 82156 17208503 ~ 17275182 (+)
LOC113539921 NA coding upstream 167886 17185021 ~ 17189452 (+)
LOC113540460 cyp26b1,LOC108267534,LOC108434641,LOC103033177,LOC107588193,LOC107750587 coding upstream 396529 16939461 ~ 16960809 (+)
pelp1 pelp1,LOC108434651,LOC102787544,LOC105891152,LOC103362118 coding downstream 33214 17405353 ~ 17419302 (+)
alox12 alox15,LOC108267745,LOC108267744,LOC108434653 coding downstream 54530 17426669 ~ 17500896 (+)
si:dkey-6n21.12 LOC108267749 coding downstream 136286 17508425 ~ 17520166 (+)
si:dkey-6n21.13 LOC108267748,LOC108434655,LOC103038466 coding downstream 148137 17520276 ~ 17523339 (+)
LOC113539911 NA coding downstream 201451 17573590 ~ 17586296 (+)
G65663 NA non-coding upstream 586495 16770605 ~ 16770843 (+)
LOC113539905 NA non-coding upstream 593877 16758227 ~ 16763461 (+)
LOC113540742 NA non-coding upstream 595463 16761804 ~ 16761875 (+)
LOC113540744 NA non-coding upstream 595691 16761572 ~ 16761647 (+)
LOC113540743 NA non-coding upstream 596000 16761266 ~ 16761338 (+)
G65927 NA non-coding downstream 30420 17402559 ~ 17403879 (+)
G65933 NA non-coding downstream 38855 17410994 ~ 17502645 (+)
G65934 NA non-coding downstream 58938 17431077 ~ 17440372 (+)
LOC117597048 NA non-coding downstream 81307 17453446 ~ 17484922 (+)
G66124 NA non-coding downstream 204965 17577104 ~ 17578946 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other upstream 986381 16367956 ~ 16370957 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other upstream 1038172 16310213 ~ 16319166 (+)
LOC113540079 sh3tc1 other upstream 1317354 16023194 ~ 16039984 (+)
zgc:194930 LOC108268002 other upstream 2698402 14632030 ~ 14658936 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other upstream 3087998 14255744 ~ 14269340 (+)
LOC113539940 NA other downstream 237353 17609492 ~ 17620079 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 628019 18000158 ~ 18010962 (+)
frem1a frem1 other downstream 741294 18113433 ~ 18143631 (+)
G66492 LOC108267609,LOC108437090 other downstream 825173 18197312 ~ 18208564 (+)
G66864 NA other downstream 1484317 18856456 ~ 18858652 (+)

Expression


Co-expression Network