G66056


Basic Information

Item Value
gene id G66056
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17402622 ~ 17403815 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU78235
ttcatgtttttttaaaacttttgcatttttttcagtgatttttaatatcattttattgaCTAAAATAACATATTGCTTATATAGTATCTTGGAATTCATATTAATATACTTCATCTTAATTTATTGTGAATTAAATTACCAGGTagcatgtatgtatattttcagAATATCAATTTTAGTAGTAGTGAGGAGTAAAAGTAGCTTAAAATCAAccttaaaatacaaaaaaagagtGACATGGTACAATATTAGTCTACAAACCAACATCTGCGTGCATTTTCCTTAGATAGACCCTAAAGAATCCAAGGGAAgatatataatatttcttttatacacTCGACTGGTTCACAGACATATGAGGATccatttggatttaaaaaaaaaaaagcaaagttttACATGAAGATGGTCTGAGAGAGCACTCTATCACAATAACACAACGTTCTCAAAGCCTACTGCTGCCTTTGAATGCATGCACGGCATTCTAGCAAAGCACTCACATAAGGACAAAGAGTTTCCGACCATCTGATGAAAATATTCTCCCTGCCATTtcataacataaatgataaaaaagcCTTTTAAAATTTGACAGCAGACAATCAACAAATTTACACATATGCAAACATccttacataaaataaatcaatcgtTTGTTTTTCATGGCATATTTTAACTCCtattgtgattataaataacattGTGTGACATACAGTGTGCTCTTGTGTTACCTGGAGCTTATTTCCTTATATCCATTAACTGTTCATGAAATCTCAAAAGAAATTCTCTAGCCATAGATTTTAGCTCGAGTCTGGTAAACAAGCTTTCTTCTCTCAATCTTACCGTTCCTTTTATTCTGTACAGCACCAAGTTCCTGTTATATCTGTTATAAGTCCTGAACGGCgttcttttaaaaatgaggtTGCACAAAGTAGGTTCCTAGATGTGTAAGCTGTATGCTTGAACTAAATGTATcaaacaaactgaaaatcttCCAATAGCAGGTAAATTATGTGTGCATTTATGTACATAAACATTGTTGGTAATGTCGTGTTGATGGCTGAactaatgaatgaagaaaataattcaAACAACACTGAACTGCTCTGGAGACAAAACCACAACTTCCCCTCAACTCAAAGGGCACAGGGCTCAACACGGCAGGCCATgatgcacatacacatgtacacgATTTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78235 True 1194 lncRNA 0.33 1 17402622 17403815

Neighbor

gene id symbol gene type direction distance location
cd99l2 cd99l2 coding downstream 59340 17329547 ~ 17343282 (-)
dysf dysf coding downstream 222981 17102529 ~ 17179641 (-)
badb NA coding downstream 579471 16819404 ~ 16823151 (-)
LOC113539980 majin coding downstream 586833 16810684 ~ 16815789 (-)
gpha2 gpha2 coding downstream 594486 16805860 ~ 16808136 (-)
zgc:92664 cssa04h17orf49,clg07h17orf49,LOC108267800,LOC108434657,LOC103038770,LOC107561866,LOC107594707,LOC107668195,LOC107678180,LOC105902403,LOC105027650 coding upstream 129350 17533165 ~ 17536773 (-)
ache ache,LOC108267799,LOC107668174,LOC107593784,LOC107750572,LOC107749789 coding upstream 136775 17540590 ~ 17553140 (-)
LOC113539922 snapc2 coding upstream 244415 17648230 ~ 17651920 (-)
ap1s1 ap1s1,LOC105921790,LOC107666294,LOC103148860,LOC107593725,LOC108443977 coding upstream 333961 17737776 ~ 17747135 (-)
serpine1 serpine1,LOC101154654 coding upstream 344140 17747955 ~ 17751639 (-)
G66028 NA non-coding downstream 91562 17310387 ~ 17311060 (-)
G65984 NA non-coding downstream 93538 17254830 ~ 17309084 (-)
LOC117597208 NA non-coding downstream 307421 17080164 ~ 17095201 (-)
G65809 NA non-coding downstream 465202 16937213 ~ 16937420 (-)
G65722 NA non-coding downstream 598368 16803195 ~ 16804254 (-)
LOC113539942 NA non-coding upstream 42946 17446761 ~ 17453705 (-)
G66274 NA non-coding upstream 167516 17571331 ~ 17637986 (-)
LOC117597047 snapc2 non-coding upstream 188024 17591839 ~ 17592470 (-)
G66310 NA non-coding upstream 282206 17686021 ~ 17686234 (-)
G66311 NA non-coding upstream 283071 17686886 ~ 17687098 (-)
G66053 NA other downstream 158 17400594 ~ 17402464 (-)
bmp15 LOC108267203 other downstream 796905 16603809 ~ 16605717 (-)
leap2 LOC100304644 other downstream 808117 16592562 ~ 16594505 (-)
tnfsf12 tnfsf12 other downstream 975998 16419164 ~ 16426624 (-)
acox3 acox3 other downstream 1330930 16054528 ~ 16071692 (-)
rnaseka LOC108267746 other upstream 35662 17439477 ~ 17444188 (-)
G66281 NA other upstream 189933 17593748 ~ 17634868 (-)
map11 c7h7orf43,cunh7orf43,si:dkey-3k24.5,LOC107687048,LOC107594676,LOC107754664,LOC107561780,LOC105895567 other upstream 388411 17792226 ~ 17839915 (-)
LOC113540242 adamtsl1 other upstream 1646335 19050150 ~ 19155221 (-)
zgc:112271 bola2,LOC105907194,LOC108436240,LOC105020731,LOC107569065,LOC106511278 other upstream 2476153 19879968 ~ 19881640 (-)

Expression


Co-expression Network