G66159


Basic Information

Item Value
gene id G66159
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17740075 ~ 17747165 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU78387
aaaaaaaaaaaaaaaatcaaacaatcttttttttttttttttaagacattaCGTAAGCCGAAATATATCAACTTATGACCTGAAGCAAAAATTCTACAGAGAAAATAGGATCAGGAATGAAGAACAAAATGGTagaaagaacagaagaaaaggAGTGCTAGGGCCAAAGCTATGAAAtgtagagagatacagaaaaaaagagctaaTAGCAAATAGAAAGGATAGGTCAGTGAAGgcgatagagagagacagatggagaaaagaGGTAAAATTGAGGAATGACTCACACTGCCAAAGTACTTATCCAGCAGCTCCACAAAGCGATGGATGACCTCTAGGGTAATCAGCTCGTTGTCCTGCTCTTCAACTGCACAGCAGAAATACAGACTggcatacCTTGTAGACTATCTTTAGGTCTCTCCACTCCAGGAAGCTGCACATTTTGGGCTTCCGAGCAAGCACCACCTGCATGAGCTCTCGCaccatttttttcttgtcacGCTCAGCTGTGGCTGTATACCATTTCTGCAGTCGCAGCTTCCCCTGCCGGCTAAACAACAGCATAAAACGcatATTTTCTCAGCTTCTCAAGAGTGTCCAGTTCAACCAAAATATACGATAAAGACGTTTTAATCAGAAACGCAAAATACTAATTATTCATGTCTATTTCACACTCTTAGCAGTTCGGTGGATTCAAAAGCCCCATTGAGACTGGAAAGGAAGCGTCAGCGCCTCctgtgcgcatgcgcactgcgGGATACCGCTTTAAGAGGCTGCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78387 True 779 lncRNA 0.42 3 17740075 17747165

Neighbor

gene id symbol gene type direction distance location
vgf LOC108267164 coding upstream 13666 17722149 ~ 17726409 (+)
LOC113539938 LOC108267768 coding upstream 37752 17700478 ~ 17702323 (+)
LOC113539928 LOC108267768 coding upstream 41804 17694648 ~ 17698271 (+)
si:ch211-196f2.6 LOC108267771 coding upstream 58589 17673548 ~ 17681486 (+)
nat16 nat16,LOC107666290,LOC107593751,LOC107750570 coding upstream 75099 17655320 ~ 17664976 (+)
trnat-agu NA coding downstream 17296 17764461 ~ 17764534 (+)
zanl LOC108267896,LOC108443962,LOC100147904,LOC107754654,LOC107561795 coding downstream 37825 17784990 ~ 17826526 (+)
LOC113539925 NA coding downstream 142318 17889483 ~ 17893961 (+)
mpdu1b mpdu1,mpdu1b,LOC107750562,LOC107687039,LOC107704248,LOC107561765 coding downstream 147735 17894900 ~ 17899493 (+)
tnk1 tnk1 coding downstream 189681 17936846 ~ 17950388 (+)
G66151 NA non-coding upstream 36620 17703234 ~ 17703455 (+)
G66144 snapc2 non-coding upstream 88365 17649365 ~ 17651710 (+)
G66128 NA non-coding upstream 105208 17593632 ~ 17634867 (+)
G66124 NA non-coding upstream 161129 17577104 ~ 17578946 (+)
LOC117597048 NA non-coding upstream 255153 17453446 ~ 17484922 (+)
G66179 NA non-coding downstream 25388 17772553 ~ 17775309 (+)
G66214 LOC108268343 non-coding downstream 126234 17873399 ~ 17877074 (+)
G66169 NA non-coding downstream 157446 17904611 ~ 17919097 (+)
G66186 NA non-coding downstream 226833 17973998 ~ 17975359 (+)
G66237 NA non-coding downstream 243270 17990435 ~ 17992247 (+)
LOC113539940 NA other upstream 119996 17609492 ~ 17620079 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other upstream 338687 17335497 ~ 17401388 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other upstream 1369118 16367956 ~ 16370957 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other upstream 1420909 16310213 ~ 16319166 (+)
LOC113540079 sh3tc1 other upstream 1700091 16023194 ~ 16039984 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 252993 18000158 ~ 18010962 (+)
frem1a frem1 other downstream 366268 18113433 ~ 18143631 (+)
G66492 LOC108267609,LOC108437090 other downstream 450147 18197312 ~ 18208564 (+)
G66864 NA other downstream 1109291 18856456 ~ 18858652 (+)
dock11 dock11,LOC107683516 other downstream 2243519 19990684 ~ 20067220 (+)

Expression


Co-expression Network