G66186


Basic Information

Item Value
gene id G66186
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17973998 ~ 17975359 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU78438
CATCCAGGCTAACATCGCACAACccactgaaaacaaaatgtctaTCACTGAAACATGAGCTGGAATTTGAGTTCAGAGTGTTGAAGGAGAAATGGACAGCAACGTGTTTCTTCtgggaaataaaacagaaacacatttgtttaatttgcttTGGCTGTGCctgaaaaatgtaatatttgaaGGCACTGTAAAGCAGTCATGGGAACAAGTCCAGCCAGTATCCGGGGAATTACAGACAAACCAGAGAATTCGGGAAAAGCGGATGTTGTTCCCGACTTGGAATTCCGAGCTGAGTGACTGTTCCAGTCCACTTCTCCGCGTCGAAGGTCGGGTTTTTCCTAGTTCCGagtacaatggattgcagcGTTATAACGAATTTGTCAGACGGAATTGGTGAAAAAGCGCGCCATCTTCAGGCCGTGGTATATTGCTCTTGATGAAAGCActcccccacccccacccctccactcactcactcacacactctcacacacacactattataaGAAGTTAGTCTCCAtcaaaacatatcctcatggtACAGCAAATAGATCAGCGTTTAAGAATAATATCAAGCTACAATCATATTAGAGAGGAGTTAGTATAACAGCAGTATGGACAGCAGAGGCCAGTATGGGCTACTGTACACAAACCCACAGACACTCTCCTGACCGCAGTGAGGTACTGTGTGCATAAACAGGCCTGTGCATGCTAGTAAATTACACACTACTCAATACCAAGATCAGATCAACACTGATCAGAAACATTGCAAAAAAGTTTCAGCCATGATCCTGCCAGGGGAGACTCCACTAAGagctaaaaaaaacccttttctGTGCAAACTATTCCATTTAATCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78438 True 859 lncRNA 0.44 2 17973998 17975359

Neighbor

gene id symbol gene type direction distance location
LOC113540162 LOC108268287 coding upstream 5687 17966324 ~ 17968311 (+)
tnk1 tnk1 coding upstream 23610 17936846 ~ 17950388 (+)
mpdu1b mpdu1,mpdu1b,LOC107750562,LOC107687039,LOC107704248,LOC107561765 coding upstream 74505 17894900 ~ 17899493 (+)
LOC113539925 NA coding upstream 80037 17889483 ~ 17893961 (+)
zanl LOC108267896,LOC108443962,LOC100147904,LOC107754654,LOC107561795 coding upstream 147472 17784990 ~ 17826526 (+)
elp5 elp5 coding downstream 17281 17992640 ~ 17998216 (+)
gabarapb gabarap,gabarapb,LOC105911381,LOC106577557,LOC105008592 coding downstream 39770 18015129 ~ 18019079 (+)
spata6l spata6l coding downstream 44852 18020211 ~ 18028051 (+)
rap1gds1 rap1gds1,LOC107552992 coding downstream 73930 18049289 ~ 18082430 (+)
sec24d sec24d,LOC103036498,LOC107732696 coding downstream 246265 18221624 ~ 18243797 (+)
G66169 NA non-coding upstream 54901 17904611 ~ 17919097 (+)
G66214 LOC108268343 non-coding upstream 96924 17873399 ~ 17877074 (+)
G66179 NA non-coding upstream 198689 17772553 ~ 17775309 (+)
G66159 NA non-coding upstream 226833 17740075 ~ 17747165 (+)
G66151 NA non-coding upstream 270543 17703234 ~ 17703455 (+)
G66237 NA non-coding downstream 15076 17990435 ~ 17992247 (+)
G66263 NA non-coding downstream 116229 18091588 ~ 18096583 (+)
G66426 NA non-coding downstream 136326 18111685 ~ 18111915 (+)
G66452 NA non-coding downstream 201875 18177234 ~ 18177642 (+)
G66637 NA non-coding downstream 406597 18381956 ~ 18382162 (+)
LOC113539940 NA other upstream 353919 17609492 ~ 17620079 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other upstream 572610 17335497 ~ 17401388 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other upstream 1603041 16367956 ~ 16370957 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other upstream 1654832 16310213 ~ 16319166 (+)
LOC113540079 sh3tc1 other upstream 1934014 16023194 ~ 16039984 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 24799 18000158 ~ 18010962 (+)
frem1a frem1 other downstream 138074 18113433 ~ 18143631 (+)
G66492 LOC108267609,LOC108437090 other downstream 221953 18197312 ~ 18208564 (+)
G66864 NA other downstream 881097 18856456 ~ 18858652 (+)
dock11 dock11,LOC107683516 other downstream 2015325 19990684 ~ 20067220 (+)

Expression


Co-expression Network