G66214 (LOC108268343)


Basic Information

Item Value
gene id G66214
gene name LOC108268343
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17873399 ~ 17877074 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU78468
CAAGGCTCAGTTTCATATCTTGCACCACTGTTTTATCTTATAGCCAAAACCTTTCCTCCCATGGGTGagaatatgaacatttcagacaaCTTAACTGCTacttaaatttaatttagtcTATGTCTCACAGAACAAGATCAGACATTTTTACAATACTGGTGTTTATAGGGCTCTTTGGAGGactcttaattatttttttggctCTATAGAATTGTTGTACACAGTACAAATGGCATTTAGTTAACTGAAAGGAAAGAATAATACAGGAAGAAGTGGTATGTAGTTAACAGAAACaaagataaatgttttttctcaGAAGTGATATGCTGACCATACACAACCCTGTGTTAGGTATACATCTTTGTGTTACATAGGTTCATAGGGGTCctgacaaaaaacataatgtattACAGGATTTTAATGATAACATGGAAATGCTCTGTATAGACCAGacatttattaaaactatttctaTACTGTGTCacagaaggtgtttttttttttcaaagtaatAGCAGTTTTTGGCAGAGAGGAGAGTGTGAAAAAAGATTTTACAAGTAGATGTTCATTTTGGCATGCTCAGTATTTTGAGCTAAGTAGAAAAACTATAAGGGTCTTACTCAAAGGCTCAACAGTGGCTGTTATATCACGGCACATTAAGTAAGGCAGTCATGGCAATACTCTCTCCAGTATTTTGAGTGTGGTTTATAATCAGTTCATGCTACAAAACATAGAGGCCTGTTCTGTGAATGTCTCGGGTTAACCTAACAaaattaatatctttttaattacttttttttttaattcagtatattttaatggcttttgcaaaaaaataaaaaagttttgacAACTTTGatccattttatttcttaaaaatgaaaaaataaaacaaacaaaaaataaaacatatttttcacaAATGCATGCATGTTGTTTATAACATAGAATACAGAATATCATTATATATCAGCATATACTTATCAACATAGTTTGTTTACTTTCTCTTCTCTGTCACTTCTATAAAAATAATGgcaataacaagaaaaaaaataataataaaatccaatACTGCTTAAGAATTCAGTTTTTAGAACACTATATAAATCTATTCTTCTAGCTATTAATAACAGTTCAAATAAATTACCTAAATATCCATAAACCCATTTTTGTTGCTCTTTGCAACCCCTGCCAGCCCCAGTTACACTAATTTAACAATAGAAACAGAATCAACTAATTGTGCATACTCTGACAATATAAATTTAATGgagggattattattattatcaaaaagTCATTCCATCCCCACAATCATAGCACCTACTCTTAAGGTACCTCTTATACTTCAATATCTAAGAGGTATTTGCTacaaaaaattatgttaaaattatgttattatgttatatgCTATTTGCTACAAAAAATTATGTTATATGCTATAGTTCCTATGGTTTGTCTTCTTTTATTACtatgtattatatacattttcagtAGAAATCTTTTATAACACCAGATATGAATCATTCAACAGATAATAattatatagtttataatatttaaatatttaattatatttaatatttagtttaaataatatttgtttttgaacttaagcaaaaaaaaaaaagaaccacataattaaattgttaaaagtgctatacaaataaaattgaattgaattgaataattatTACATCCTTGTTTCAACAATTCAGTTACATGCTATGACTTTGTAAATGACACTTGTAATATGTGcttcatttttcagttttgtatATGAATAAATCCAGCCCCATGAAATATTATCAGCTCTGTATTGTGATCCTAGCATTTAATGTGACTTTCTCATTTCCCATGTGGTGCAGTTAGTAAAATCCTGTTGAGAAGACAGCCATATCACCATAATGATTATTTGCAGATGTCTGTCAATGGTAATGTTTATTTGCAGATGTCTGTCGATGGTAATTTCCACTACTTCCAGCCAAAAAGactattttagattttaactACTGACAAGTGCTCTGGAGCGGGTGTTTCCGTCAGAGCTCAGATTGTTCATGGGCAGCATTCTTCGAACAGTGTCAATTTCGACATTTTTGCGGAAAGTCTCTGTGGTAAAATAGTAAGCCAGTGGGTCCAGAATGGCATTCAGACAACTTATCATCAAAGCATAGTAGTAGGCAGATATCACTGAACATGGTATTATTTCGATATGGTCTCTGTAGGAGTAAATCACCGCCAGCATGAAATGATATGGCAGAAAGCAGCACAGAAATATGGCCAGGTTAATGCTTACCATCCTCTGGATCTTGCAGCTGTCAAGCAAGCCGGACATCTGGGCTGCTGTGCTTTTGCTGACAGCACGTACTAACCCCCAAGAACAGAGAATCATGATGATCAGCGGCATCCCAAATCCTACTGTCAGTGAGGAGGCTGGCTCCAACTGTTAGCATCCAAATCCCCAGACAGACTAGTGGTGCCTTTTTGCGGCCTTCACGCACTCGGGATGACATAGGGAAGCAGACAGCCAGGCAGCGGTCAAGGCTAACACAGGTAAGGAGCAAGATGCTTCCATACATGTTGGCTAACAGTATAAGACCAGCAAACTCACAGACCTTTTGTGATAGGCCTTGAAATCCCAAGTGATAATAGATCCGTAATGGTAGAGTACAAACCAGAAGGAGATCTGCTATTGCAAGGTTGGTCATGTATACAATGGTGTGTGAGCGTGACTTAGTGCAGCAGAAAAAAACTACAAGTGCCATAAGGTTGAGAGTGATCCCAGATATACAGACCACACTATACACTGCAACAAAAACATGGTTTGTCTGATTCTGACACCGTTCAGCTGTGGCATCCTGACACGTCAAGTTACACGACATAGTTCCTCTTTTGGATGGGGCTTAGAATAGTTTATAGCAAGCTGCATTGAAACACAGATAAATGAACGTTAACAAAGAATGGTAGCAAAAAGTTCAAGTCATTTTGCAATATACTTAGGCACAATGTAGAAATGTACTTCTCTATCTCATAGAAAGATAAAGGTCGTGAACTGAAAACCTCAAAATATTACTCAACTCTCTATGTAGTTGCGTGTGAATAACCAAAAGGTGGGAAACTAACGGCTGATTCTTCTAACAGCCAACACGGTGTTGACATTACACAAATGTTGCATGTTGGTAAAATTAATCTCAGGGTAAAAGGggaaaatatttcttaaatgtttgtgatgtaaaatgCTGTCTTTGCCTACCATACAATATTTGTAGAAACCTTGCACTATATTCAGCTTTAGACAAAATCTATcacaaatatcatttaaaaaaaaacctacaatgGATTTGATCCATTTCTATATTTGCAATTATTTAATTGTTaagcttttttaaatttgttccCATCTGATTTTACAAATAGGGAAAGATATGATATAAGCAAAGAATTGTCATTCTAGGGGTATCCCACAAAATAGCAGTTATGATgtcaatttccttttttttactaGGAACCTAATTTCTATTGTACCACTGGCAAtcaatttatattattttttaattatatgtaactataaaaat

Function

NR:

description
PREDICTED: lysophosphatidic acid receptor 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78468 True 3575 lncRNA 0.34 2 17873399 17877074

Neighbor

gene id symbol gene type direction distance location
zanl LOC108267896,LOC108443962,LOC100147904,LOC107754654,LOC107561795 coding upstream 46873 17784990 ~ 17826526 (+)
trnat-agu NA coding upstream 108865 17764461 ~ 17764534 (+)
vgf LOC108267164 coding upstream 146990 17722149 ~ 17726409 (+)
LOC113539938 LOC108267768 coding upstream 171076 17700478 ~ 17702323 (+)
LOC113539928 LOC108267768 coding upstream 175128 17694648 ~ 17698271 (+)
LOC113539925 NA coding downstream 12409 17889483 ~ 17893961 (+)
mpdu1b mpdu1,mpdu1b,LOC107750562,LOC107687039,LOC107704248,LOC107561765 coding downstream 17826 17894900 ~ 17899493 (+)
tnk1 tnk1 coding downstream 59772 17936846 ~ 17950388 (+)
LOC113540162 LOC108268287 coding downstream 89250 17966324 ~ 17968311 (+)
elp5 elp5 coding downstream 115566 17992640 ~ 17998216 (+)
G66179 NA non-coding upstream 98090 17772553 ~ 17775309 (+)
G66159 NA non-coding upstream 126234 17740075 ~ 17747165 (+)
G66151 NA non-coding upstream 169944 17703234 ~ 17703455 (+)
G66144 snapc2 non-coding upstream 221689 17649365 ~ 17651710 (+)
G66128 NA non-coding upstream 238532 17593632 ~ 17634867 (+)
G66169 NA non-coding downstream 27537 17904611 ~ 17919097 (+)
G66186 NA non-coding downstream 96924 17973998 ~ 17975359 (+)
G66237 NA non-coding downstream 113361 17990435 ~ 17992247 (+)
G66263 NA non-coding downstream 214514 18091588 ~ 18096583 (+)
G66426 NA non-coding downstream 234611 18111685 ~ 18111915 (+)
LOC113539940 NA other upstream 253320 17609492 ~ 17620079 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other upstream 472011 17335497 ~ 17401388 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other upstream 1502442 16367956 ~ 16370957 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other upstream 1554233 16310213 ~ 16319166 (+)
LOC113540079 sh3tc1 other upstream 1833415 16023194 ~ 16039984 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 123084 18000158 ~ 18010962 (+)
frem1a frem1 other downstream 236359 18113433 ~ 18143631 (+)
G66492 LOC108267609,LOC108437090 other downstream 320238 18197312 ~ 18208564 (+)
G66864 NA other downstream 979382 18856456 ~ 18858652 (+)
dock11 dock11,LOC107683516 other downstream 2113610 19990684 ~ 20067220 (+)

Expression


Co-expression Network