G66237


Basic Information

Item Value
gene id G66237
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17990435 ~ 17992247 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU78493
TTGAAGTGAATATCAGCAGGGCTGTGACTCGGCCTGAGCACAAGAGCACCACCAGTgattgtaagaaataaaacacagaatggtgtgaagaaATGAAGCTGAGCCTGATTTCTTTCTATCCCAGGGTGTAGAtgcatgcagcctatcagttaTCACCGTTTCAAGTGACTGCACAGAGTGAAACTCCGCCCTTTAGATGTGATCTCCATTTGGTCTTATACTTTTCTGCCTATGTCGATGAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78493 True 244 lncRNA 0.44 2 17990435 17992247

Neighbor

gene id symbol gene type direction distance location
LOC113540162 LOC108268287 coding upstream 22124 17966324 ~ 17968311 (+)
tnk1 tnk1 coding upstream 40047 17936846 ~ 17950388 (+)
mpdu1b mpdu1,mpdu1b,LOC107750562,LOC107687039,LOC107704248,LOC107561765 coding upstream 90942 17894900 ~ 17899493 (+)
LOC113539925 NA coding upstream 96474 17889483 ~ 17893961 (+)
zanl LOC108267896,LOC108443962,LOC100147904,LOC107754654,LOC107561795 coding upstream 163909 17784990 ~ 17826526 (+)
elp5 elp5 coding downstream 393 17992640 ~ 17998216 (+)
gabarapb gabarap,gabarapb,LOC105911381,LOC106577557,LOC105008592 coding downstream 22882 18015129 ~ 18019079 (+)
spata6l spata6l coding downstream 27964 18020211 ~ 18028051 (+)
rap1gds1 rap1gds1,LOC107552992 coding downstream 57042 18049289 ~ 18082430 (+)
sec24d sec24d,LOC103036498,LOC107732696 coding downstream 229377 18221624 ~ 18243797 (+)
G66186 NA non-coding upstream 15076 17973998 ~ 17975359 (+)
G66169 NA non-coding upstream 71338 17904611 ~ 17919097 (+)
G66214 LOC108268343 non-coding upstream 113361 17873399 ~ 17877074 (+)
G66179 NA non-coding upstream 215126 17772553 ~ 17775309 (+)
G66159 NA non-coding upstream 243270 17740075 ~ 17747165 (+)
G66263 NA non-coding downstream 99341 18091588 ~ 18096583 (+)
G66426 NA non-coding downstream 119438 18111685 ~ 18111915 (+)
G66452 NA non-coding downstream 184987 18177234 ~ 18177642 (+)
G66637 NA non-coding downstream 389709 18381956 ~ 18382162 (+)
G66654 NA non-coding downstream 438315 18430562 ~ 18431136 (+)
LOC113539940 NA other upstream 370356 17609492 ~ 17620079 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other upstream 589047 17335497 ~ 17401388 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other upstream 1619478 16367956 ~ 16370957 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other upstream 1671269 16310213 ~ 16319166 (+)
LOC113540079 sh3tc1 other upstream 1950451 16023194 ~ 16039984 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 7911 18000158 ~ 18010962 (+)
frem1a frem1 other downstream 121186 18113433 ~ 18143631 (+)
G66492 LOC108267609,LOC108437090 other downstream 205065 18197312 ~ 18208564 (+)
G66864 NA other downstream 864209 18856456 ~ 18858652 (+)
dock11 dock11,LOC107683516 other downstream 1998437 19990684 ~ 20067220 (+)

Expression


Co-expression Network