LOC117597047 (snapc2)


Basic Information

Item Value
gene id LOC117597047
gene name snapc2
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17591839 ~ 17592470 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU78569
AAAGAtttgaggaggtgtgtgtggtgcagcgGGTGTATCTGCAGGTCCAAAAACAGAgaagtaaggaacaaaacaacaaagtaCCAATGGAACTATGGGCAGAAGTAGCACAGAAAATGGCTGGTGTCCATGAGGAAACAATATCTTCTGCCTTCTCTCAAATGCTGGTAATTGCTGCCACAGAGCCCTGCAGCCTCCACTACTCAGATCCTC
>XR_004577990.1
GTTCCCTACTGGGTGCCTTCTACTTGCCCTGAAACAACAGAACAGGTTAAATACAGAACTGGATTTTTTGGCACTTCAGAAGAAATTTCCTAAATGGTCTCTGCATCAGATACAGAACATGATAAAGAtttgaggaggtgtgtgtggtgcagcgGGTGTATCTGCAGGTCCAAAAACAGAgaagtaaggaacaaaacaacaaagtaCCAATGGAACTATGGGCAGAAGTAGCACAGAAAATGGCTGGTGTCCATGAGGAAACAATATCTTCTGCCTTCTCTCAAATGCTGGTAATTGCTGCCACAGAGCCCTGCAGCCTCCACTACTCAGATCCTCCAC

Function

symbol description
snapc2 Acts upstream of or within intrahepatic bile duct development. Is expressed in brain and liver. Orthologous to human SNAPC2 (small nuclear RNA activating complex polypeptide 2).

NR:

description
PREDICTED: snRNA-activating protein complex subunit 2 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78569 False 213 lncRNA 0.47 2 17591842 17592247
XR_004577990.1 True 339 lncRNA 0.45 3 17591839 17592470

Neighbor

gene id symbol gene type direction distance location
ache ache,LOC108267799,LOC107668174,LOC107593784,LOC107750572,LOC107749789 coding downstream 38699 17540590 ~ 17553140 (-)
zgc:92664 cssa04h17orf49,clg07h17orf49,LOC108267800,LOC108434657,LOC103038770,LOC107561866,LOC107594707,LOC107668195,LOC107678180,LOC105902403,LOC105027650 coding downstream 55066 17533165 ~ 17536773 (-)
cd99l2 cd99l2 coding downstream 248557 17329547 ~ 17343282 (-)
dysf dysf coding downstream 412198 17102529 ~ 17179641 (-)
badb NA coding downstream 768688 16819404 ~ 16823151 (-)
LOC113539922 snapc2 coding upstream 55760 17648230 ~ 17651920 (-)
ap1s1 ap1s1,LOC105921790,LOC107666294,LOC103148860,LOC107593725,LOC108443977 coding upstream 145306 17737776 ~ 17747135 (-)
serpine1 serpine1,LOC101154654 coding upstream 155485 17747955 ~ 17751639 (-)
zgc:77439 LOC108268285,LOC108443975,LOC107666303,LOC107561800,LOC107750567,LOC107669018 coding upstream 172678 17765148 ~ 17769886 (-)
trnas-uga NA coding upstream 178680 17771150 ~ 17771231 (-)
LOC113539942 NA non-coding downstream 138134 17446761 ~ 17453705 (-)
G66056 NA non-coding downstream 188024 17402622 ~ 17403815 (-)
G66028 NA non-coding downstream 280779 17310387 ~ 17311060 (-)
G65984 NA non-coding downstream 282755 17254830 ~ 17309084 (-)
LOC117597208 NA non-coding downstream 496638 17080164 ~ 17095201 (-)
G66310 NA non-coding upstream 93551 17686021 ~ 17686234 (-)
G66311 NA non-coding upstream 94416 17686886 ~ 17687098 (-)
G66318 NA non-coding upstream 104307 17696777 ~ 17701254 (-)
G66349 NA non-coding upstream 206652 17799122 ~ 17812526 (-)
G66350 NA non-coding upstream 209196 17801666 ~ 17809014 (-)
rnaseka LOC108267746 other downstream 147651 17439477 ~ 17444188 (-)
G66053 NA other downstream 189375 17400594 ~ 17402464 (-)
bmp15 LOC108267203 other downstream 986122 16603809 ~ 16605717 (-)
leap2 LOC100304644 other downstream 997334 16592562 ~ 16594505 (-)
tnfsf12 tnfsf12 other downstream 1165215 16419164 ~ 16426624 (-)
G66281 NA other upstream 1278 17593748 ~ 17634868 (-)
map11 c7h7orf43,cunh7orf43,si:dkey-3k24.5,LOC107687048,LOC107594676,LOC107754664,LOC107561780,LOC105895567 other upstream 199756 17792226 ~ 17839915 (-)
LOC113540242 adamtsl1 other upstream 1457680 19050150 ~ 19155221 (-)
zgc:112271 bola2,LOC105907194,LOC108436240,LOC105020731,LOC107569065,LOC106511278 other upstream 2287498 19879968 ~ 19881640 (-)
G67587 NA other upstream 2295709 19888179 ~ 19888726 (-)

Expression


Co-expression Network