G66281


Basic Information

Item Value
gene id G66281
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17593748 ~ 17634868 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU78577
NNNNNNNactctcttacaaccactagtgattctgccacaacagctgagagttcagaaacaaccacagaaaaCTCTCTTAcgaccactagtgattctggcacaacagctgagagttcggaaacaaccacagacaactctcttacaaccactagtgactctgccacaacagctgagagCTCGGAaccaaccacagacaactctcttacaactacCCCAGATGCATCCGTAACACCTAGTgtttctggcacaacagctgagagttcagacacaaccacagacaactctcttacaaccactagtgattctggcacaacagctgagagttcagaaacaaccacagacaactctcttacgaccactagtgattctggcacaacagctgagagttcggaaacaaccacagacaactctcttacaaccactagtgactctgccacaacagctgagagctcggaaacaaccacagacaactcttttacaaccactagtgattctggtactacagctgagagttcagacacaaccacagacaactctcttacgaccactagtgattctggcactacagctgagagttcagacacaaccacagacaactctcttacaaccactagtgatcctggcacaacagctgagagttcggaaacaaccacagacaactctcttacaaccactagtgattctggcacaacagctgagggttcagaaacaaccacagacaactctcttacaaccactagtgatcctggcacaacagctgagagttcggaaccaaccacagacaactctgtTACAACTACCCCAGATGCATCCGTAACACCTAGTgtttctggcacaacagctgagagttcggaaacaaccacagacaactctcttacaactacATCAGATGCAACTGCAAcaactagtgattctggcacaacagctgagagttcggaaacaaccacagacaactctcttacatcAACTAGTGATTCTCGCACTACAGCTGAGAGTTTagacacaaccacagacaactctctcacgaccactagtgattctggcacaacagctgagagttcggaaacaaccacagacaactctcttacaaccactagtgattctgggaCAACAGCTGAGGgttcggaaacaaccacagacaactctcttacaactacCCCAGATGCAACCGTAACATCTACTGACTCTGCCACAACAGCTGTGAGTTCAGAAAccaccacagacaactctcttacaaccactagtgattctggcacaacagctgagggtttggaaacaaccacagacaactctcttacaactacCCCAGATGCAACCGCAACAACTACTGACTCTGCCACAACAGCTGTGAGTTCAGAAAccaccacagacaactctctcaCGACCACTAGtcattctggcacaacagctgatagtttggaaacaaccacagacaactctcttacaactacCCCAGATGCAACCGTAACAACTACTGACTCTGCCACAACAGCTGTgagttcagaaacaaccacagacaactctcttacgaccactagtgattctggcacaacagctgagagttcagaaacaaccacagacaactctttTACGACCACCAGTGATTCtcgcacaacagctgagagttcagacacaaccactagtgattctggcacaacagctgagagttcagaatCAACCACAGACAACTTTATTACTACCagtagtgattctggcacaacagctgagagttcggaaacaaccacagacaactctgtTACGACCACTAGTGATTTTGGCActacagctgagagttcagacacaaccacagacaactctcctacaaccactagtgattctggttcaacagctgagagttcacacacaaccacagacaactttggtacaaccactagtgattctagCACAACAGCTGTGAGTTCAGAAACCAcgacagacaactctcttacgaccactagtgattctggcacaacagctgatagtttggaaacaaccacagacaactctcttacaaccactagtgattctggcacaacagctgagagttcagacacaaccacagacaactctgttacaaccactagtgattctggcactacagctgagagttcagacacaaccacagacaactctcttacaaccactagtgattctggcactacagctgagagttcggaaacaaccacagacaactctcttacaactacCCCAGATGCAACCGTAACAACTACTGACTCTGCCACAACAGCTGTgagttcagaaacaaccacagacaactctcttacatccactagtgattctggcacaacagctgagagtttgGAAACAACGACatacaactctcttacaaccactagtgattctggcacaacagctgagagttcggaaacaaccacagacaactctcttacaaccactagtgatactggcacaacagctgagagttcggaaacaaccacagacaactctcttacaaccactagtgattctgccACAACAGCTGAGGgttcggaaacaaccacagacaactctcttacaactacCCCAGATGCAACCGTAACATCTACTGACTCTGCCACAACAGCTGTGAGTTCAGAAAccaccacagacaactctcttacaaccactagtgattctggcacaacagctgagagttcagaaacaaccacagacaactctcttacgaccactagtgattctggcactacagctgagagttcagacacaaccacagacaactctcttacaaccaccaGTGATTCtgccacaacagctgagagttcgaaaacaaccacagacaactctcttacaaccactagtgattctggcactacagctgagagttcagacacaaccacagacaactcccttacaaccactagtgattctgccacaacagctgagagttcggaaccaaccacagacaactctcttacaaccactagtgattctgccacaacagctgagagttcagaaacaaccacagaaaaCTCTCTTAcgaccactagtgattctgccacaacagctgagagttcggaaacaaccacagacaactctcttacaaccactagtgactctgccacaacagctgagagctcagacacaaccacagacaactctcttacaaccactagtgattctggcacaacagctgagagttcagacacaaccacagacaactctcttacaaccactagtgattctgtcacaacagctgagagttcagaaacaaccacagacaactctcttacaaccactagtgattctggcacaacagctgagagatcggaaacaaccacagacaactctcttacaaccactcgTGATTCTgtcacaacagctgagagttcggaaacaaccacagacaactctcttatgaccactagtgattctggcacaacagctgagagttcggaaacaaccacagacaactctctaatgaccactagtgattctgcgACAACAGctgagagttcggaaacaaccacagacaactctcttacaaccactagtgattctggcacaacagctgagagttcagaaacaaccacagacaactctcttacgaCCACCAGTGATTCTGGACAACAGCTGAGAGTCGGAcaagaaacaaccacagacaactctcttacaactacCCCAGATGCAACCAGAACAACTAGTGACTCtgccacaacagctgagagttctgAAAC
>TU78578
NNNNNNNactctcttacaaccactagtgattctgccacaacagctgagagttcagaaacaaccacagaaaaCTCTCTTAcgaccactagtgattctggcacaacagctgagagttcggaaacaaccacagacaactctcttacaaccactagtgactctgccacaacagctgagagCTCGGAaccaaccacagacaactctcttacaactacCCCAGATGCATCCGTAACACCTAGTgtttctggcacaacagctgagagttcagacacaaccacagacaactctcttacaaccactagtgattctggcacaacagctgagagttcagaaacaaccacagacaactctcttacgaccactagtgattctggcacaacagctgagagttcggaaacaaccacagacaactctcttacaaccactagtgactctgccacaacagctgagagctcggaaacaaccacagacaactcttttacaaccactagtgattctggtactacagctgagagttcagacacaaccacagacaactctcttacgaccactagtgattctggcactacagctgagagttcagacacaaccacagacaactctcttacaaccactagtgatcctggcacaacagctgagagttcggaaacaaccacagacaactctcttacaaccactagtgattctggcacaacagctgagggttcagaaacaaccacagacaactctcttacaaccactagtgattctggcacaacagctgagagttcggaaacaaccacagacaactctcttacaaccactagtgattctgggaCAACAGCTGAGGgttcggaaacaaccacagacaactctcttacaactacCCCAGATGCAACCGTAACATCTACTGACTCTGCCACAACAGCTGTGAGTTCAGAAAccaccacagacaactctcttacaaccactagtgattctggcacaacagctgagggtttggaaacaaccacagacaactctcttacaactacCCCAGATGCAACCGCAACAACTACTGACTCTGCCACAACAGCTGTGAGTTCAGAAAccaccacagacaactctctcaCGACCACTAGtcattctggcacaacagctgatagtttggaaacaaccacagacaactctcttacaactacCCCAGATGCAACCGTAACAACTACTGACTCTGCCACAACAGCTGTgagttcagaaacaaccacagacaactctcttacgaccactagtgattctggcacaacagctgagagttcagaaacaaccacagacaactctttTACGACCACCAGTGATTCtcgcacaacagctgagagttcagacacaaccactagtgattctggcacaacagctgagagttcagaatCAACCACAGACAACTTTATTACTACCagtagtgattctggcacaacagctgagagttcggaaacaaccacagacaactctgtTACGACCACTAGTGATTTTGGCActacagctgagagttcagacacaaccacagacaactctcctacaaccactagtgattctggttcaacagctgagagttcacacacaaccacagacaactttggtacaaccactagtgattctagCACAACAGCTGTGAGTTCAGAAACCAcgacagacaactctcttacgaccactagtgattctggcacaacagctgatagtttggaaacaaccacagacaactctcttacaaccactagtgattctggcacaacagctgagagttcagacacaaccacagacaactctgttacaaccactagtgattctggcactacagctgagagttcagacacaaccacagacaactctcttacaaccactagtgattctggcactacagctgagagttcggaaacaaccacagacaactctcttacaactacCCCAGATGCAACCGTAACAACTACTGACTCTGCCACAACAGCTGTgagttcagaaacaaccacagacaactctcttacatccactagtgattctggcacaacagctgagagtttgGAAACAACGACatacaactctcttacaaccactagtgattctggcacaacagctgagagttcggaaacaaccacagacaactctcttacaaccactagtgatactggcacaacagctgagagttcggaaacaaccacagacaactctcttacaaccactagtgattctgccACAACAGCTGAGGgttcggaaacaaccacagacaactctcttacaactacCCCAGATGCAACCGTAACATCTACTGACTCTGCCACAACAGCTGTGAGTTCAGAAAccaccacagacaactctcttacaaccactagtgattctggcacaacagctgagagttcagaaacaaccacagacaactctcttacgaccactagtgattctggcactacagctgagagttcagacacaaccacagacaactctcttacaaccaccaGTGATTCtgccacaacagctgagagttcgaaaacaaccacagacaactctcttacaaccactagtgattctggcactacagctgagagttcagacacaaccacagacaactcccttacaaccactagtgattctgccacaacagctgagagttcggaaccaaccacagacaactctcttacaaccactagtgattctgccacaacagctgagagttcagaaacaaccacagaaaaCTCTCTTAcgaccactagtgattctgccacaacagctgagagttcggaaacaaccacagacaactctcttacaaccactagtgactctgccacaacagctgagagctcggaaacaaccacagacaactcttttacaaccactagtgattctggtactacagctgagagttcagacacaaccacagacaactctcttacaaccactagtgatcctggcacaacagctgagagttcggaaccaaccacagacaactctcttacaaccactagtgattctggcacaacagctgagagttcagaaacaaccacagacaactctcttacaaccactagtgattctggcacaacagctgagagtttggaaacaaccacagacaactctcttacaaccactagtgattctggcacaacagctgagagttcggaaacaaccacagacaactctcttacgaccactagtgattctggcactacagctgagagttcagacacaaccacagacaactctcttacaaccactagtgattttGGCACAACAGctgagagttcagacacaaccacagacaactctcttacaatcactagtgattctggcacaacagctgagagttcggaaACAACCACTAGTCATTCTGGCACtacagctgagagttcggaaacaaccacagaaaactatcttacaaccactagtgattctggcacaacagctgagagttcggaaacaaccacagacaactctcttataACGACTAGTGACtatggcacaacagctgagagttcggaaacaaccacagacaactctcttacaaccacgagtgattctggcacaacaggtgagagttcagaaacaaccacagacaactctcttacaaccactagtgattctgggacaacagctgagagttcggaaACAACCAAAGACAACTCTCTAAtgaccactagtgattctgcgACAACAGGGGAGAATTTGGAAACAACCactgacaactctcttacaaccactagtgattctggaacaacagctgagagttcggaaacaaccacagacaactctctaatgaccactagtgattctgcgACAACAGGTGAGAATTCGGAAACAACCactgacaactctcttacaaccactagtgattctggaacaacagctgagagttcagaaacaaccacagacaactctcttacgaCCACCAGTGATTCTGcgacaacagctgagagttcggacacaaccacagacaactctcttacaactacCCCAGATGCAACCGTAACAACTAGTGACTCtgccacaacagctgagagttcggaaacaaccacagacaactctcttacaaccactagtgattctggcactaCAGCTGAGAGATCagacacaaccacagacaactcg
>TU78579
NNNNNNNactctcttacaaccactagtgattctgccacaacagctgagagttcagaaacaaccacagaaaaCTCTCTTAcgaccactagtgattctggcacaacagctgagagttcggaaacaaccacagacaactctcttacaaccactagtgactctgccacaacagctgagagCTCGGAaccaaccacagacaactctcttacaactacCCCAGATGCATCCGTAACACCTAGTgtttctggcacaacagctgagagttcagacacaaccacagacaactctcttacaaccactagtgattctggcacaacagctgagagttcagaaacaaccacagacaactctcttacgaccactagtgattctggcacaacagctgagagttcggaaacaaccacagacaactctcttacaaccactagtgactctgccacaacagctgagagctcggaaacaaccacagacaactcttttacaaccactagtgattctggtactacagctgagagttcagacacaaccacagacaactctcttacgaccactagtgattctggcactacagctgagagttcagacacaaccacagacaactctcttacaaccactagtgatcctggcacaacagctgagagttcggaaacaaccacagacaactctcttacaaccactagtgattctggcacaacagctgagggttcagaaacaaccacagacaactctcttacaaccactagtgatcctggcacaacagctgagagttcggaaccaaccacagacaactctgtTACAACTACCCCAGATGCATCCGTAACACCTAGTgtttctggcacaacagctgagagttcggaaacaaccacagacaactctcttacaactacATCAGATGCAACTGCAAcaactagtgattctggcacaacagctgagagttcggaaacaaccacagacaactctcttacatcAACTAGTGATTCTCGCACTACAGCTGAGAGTTTagacacaaccacagacaactctctcacgaccactagtgattctggcacaacagctgagagttcggaaacaaccacagacaactctcttacgaCGACTaatgattctggcacaacagctgagagtatcgaaacaaccacagacaactcccttacaaccactagtgattctggcacaacagctgagagttcagaaacaaccacagacaactctcttaaaACCACTaatgattctggcacaacagctgagagttcagaaacaaccacagacaactctcttatgaccactagtgattctgcgACAACAGGTGAGAgttcggaaacaaccacagacaactctcttacaaccactagtgattctggcacaacagctgagagtttggaaacaaccacagacaactctcttacaaccactagtgattctggcacaacagctgagagttcggaaacaaccacagacaactctcttacaactacCCCAGATGCAACCAGAACAACTAGTGACTCtgccacaacagctgagagttctgAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78577 False 3695 lncRNA 0.46 5 17593748 17634868
TU78578 True 4086 TUCP 0.46 5 17594449 17634868
TU78579 False 1529 lncRNA 0.46 3 17593748 17634868

Neighbor

gene id symbol gene type direction distance location
ache ache,LOC108267799,LOC107668174,LOC107593784,LOC107750572,LOC107749789 coding downstream 40608 17540590 ~ 17553140 (-)
zgc:92664 cssa04h17orf49,clg07h17orf49,LOC108267800,LOC108434657,LOC103038770,LOC107561866,LOC107594707,LOC107668195,LOC107678180,LOC105902403,LOC105027650 coding downstream 56975 17533165 ~ 17536773 (-)
cd99l2 cd99l2 coding downstream 250466 17329547 ~ 17343282 (-)
dysf dysf coding downstream 414107 17102529 ~ 17179641 (-)
badb NA coding downstream 770597 16819404 ~ 16823151 (-)
LOC113539922 snapc2 coding upstream 13362 17648230 ~ 17651920 (-)
ap1s1 ap1s1,LOC105921790,LOC107666294,LOC103148860,LOC107593725,LOC108443977 coding upstream 102908 17737776 ~ 17747135 (-)
serpine1 serpine1,LOC101154654 coding upstream 113087 17747955 ~ 17751639 (-)
zgc:77439 LOC108268285,LOC108443975,LOC107666303,LOC107561800,LOC107750567,LOC107669018 coding upstream 130280 17765148 ~ 17769886 (-)
trnas-uga NA coding upstream 136282 17771150 ~ 17771231 (-)
LOC117597047 snapc2 non-coding downstream 1278 17591839 ~ 17592470 (-)
LOC113539942 NA non-coding downstream 140043 17446761 ~ 17453705 (-)
G66056 NA non-coding downstream 189933 17402622 ~ 17403815 (-)
G66028 NA non-coding downstream 282688 17310387 ~ 17311060 (-)
G65984 NA non-coding downstream 284664 17254830 ~ 17309084 (-)
G66310 NA non-coding upstream 51153 17686021 ~ 17686234 (-)
G66311 NA non-coding upstream 52018 17686886 ~ 17687098 (-)
G66318 NA non-coding upstream 61909 17696777 ~ 17701254 (-)
G66349 NA non-coding upstream 164254 17799122 ~ 17812526 (-)
G66350 NA non-coding upstream 166798 17801666 ~ 17809014 (-)
rnaseka LOC108267746 other downstream 149560 17439477 ~ 17444188 (-)
G66053 NA other downstream 191284 17400594 ~ 17402464 (-)
bmp15 LOC108267203 other downstream 988031 16603809 ~ 16605717 (-)
leap2 LOC100304644 other downstream 999243 16592562 ~ 16594505 (-)
tnfsf12 tnfsf12 other downstream 1167124 16419164 ~ 16426624 (-)
map11 c7h7orf43,cunh7orf43,si:dkey-3k24.5,LOC107687048,LOC107594676,LOC107754664,LOC107561780,LOC105895567 other upstream 157358 17792226 ~ 17839915 (-)
LOC113540242 adamtsl1 other upstream 1415282 19050150 ~ 19155221 (-)
zgc:112271 bola2,LOC105907194,LOC108436240,LOC105020731,LOC107569065,LOC106511278 other upstream 2245100 19879968 ~ 19881640 (-)
G67587 NA other upstream 2253311 19888179 ~ 19888726 (-)
LOC113539792 LOC108267751,LOC108440128 other upstream 2284612 19919480 ~ 19943834 (-)

Expression


Co-expression Network