G66310


Basic Information

Item Value
gene id G66310
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17686021 ~ 17686234 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU78612
CGGGGGTGGATGATAGGTATTGCACCTGCCTTTGCTACTTCCTGTGGGCAACcattttaaacaggaagtgaggtggCAATGGGGTGTGGGAAGGGAGACAGTTTTTTGATCTACATGTGAGAATACCTTGGAATAGCCCAGATCCCTTGTTTGTAGCTTTGTGATTTCTTTATTCCATTAAAATGTCAAGATTTTCTAGTTGTGAGTAGCATCA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78612 True 214 lncRNA 0.43 1 17686021 17686234

Neighbor

gene id symbol gene type direction distance location
LOC113539922 snapc2 coding downstream 34101 17648230 ~ 17651920 (-)
ache ache,LOC108267799,LOC107668174,LOC107593784,LOC107750572,LOC107749789 coding downstream 132881 17540590 ~ 17553140 (-)
zgc:92664 cssa04h17orf49,clg07h17orf49,LOC108267800,LOC108434657,LOC103038770,LOC107561866,LOC107594707,LOC107668195,LOC107678180,LOC105902403,LOC105027650 coding downstream 149248 17533165 ~ 17536773 (-)
cd99l2 cd99l2 coding downstream 342739 17329547 ~ 17343282 (-)
dysf dysf coding downstream 506380 17102529 ~ 17179641 (-)
ap1s1 ap1s1,LOC105921790,LOC107666294,LOC103148860,LOC107593725,LOC108443977 coding upstream 51542 17737776 ~ 17747135 (-)
serpine1 serpine1,LOC101154654 coding upstream 61721 17747955 ~ 17751639 (-)
zgc:77439 LOC108268285,LOC108443975,LOC107666303,LOC107561800,LOC107750567,LOC107669018 coding upstream 78914 17765148 ~ 17769886 (-)
trnas-uga NA coding upstream 84916 17771150 ~ 17771231 (-)
gal3st4 gal3st4,LOC108443973,LOC107593694 coding upstream 156920 17843154 ~ 17853369 (-)
G66274 NA non-coding downstream 48035 17571331 ~ 17637986 (-)
LOC117597047 snapc2 non-coding downstream 93551 17591839 ~ 17592470 (-)
LOC113539942 NA non-coding downstream 232316 17446761 ~ 17453705 (-)
G66056 NA non-coding downstream 282206 17402622 ~ 17403815 (-)
G66028 NA non-coding downstream 374961 17310387 ~ 17311060 (-)
G66311 NA non-coding upstream 652 17686886 ~ 17687098 (-)
G66318 NA non-coding upstream 10543 17696777 ~ 17701254 (-)
G66349 NA non-coding upstream 112888 17799122 ~ 17812526 (-)
G66350 NA non-coding upstream 115432 17801666 ~ 17809014 (-)
G66355 NA non-coding upstream 177776 17864010 ~ 17864883 (-)
G66281 NA other downstream 51153 17593748 ~ 17634868 (-)
rnaseka LOC108267746 other downstream 241833 17439477 ~ 17444188 (-)
G66053 NA other downstream 283557 17400594 ~ 17402464 (-)
bmp15 LOC108267203 other downstream 1080304 16603809 ~ 16605717 (-)
leap2 LOC100304644 other downstream 1091516 16592562 ~ 16594505 (-)
map11 c7h7orf43,cunh7orf43,si:dkey-3k24.5,LOC107687048,LOC107594676,LOC107754664,LOC107561780,LOC105895567 other upstream 105992 17792226 ~ 17839915 (-)
LOC113540242 adamtsl1 other upstream 1363916 19050150 ~ 19155221 (-)
zgc:112271 bola2,LOC105907194,LOC108436240,LOC105020731,LOC107569065,LOC106511278 other upstream 2193734 19879968 ~ 19881640 (-)
G67587 NA other upstream 2201945 19888179 ~ 19888726 (-)
LOC113539792 LOC108267751,LOC108440128 other upstream 2233246 19919480 ~ 19943834 (-)

Expression


Co-expression Network