G66318


Basic Information

Item Value
gene id G66318
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17696777 ~ 17701254 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU78620
CCCGGCAAGCCAGAAAAATAAACTTGGAGAGTTTTTCAGGTCCTGGGTTGTCACGTCTTGTCAGTCGTTTGGTTGTTACACTTGGGTAAACCTGCTTAATGTAGCAGTCAGTTACTCTCTGGATAACTCCAGCCACACCGCGTCCTCTTTCACTAGGACACACCCTTAATCCCTCCAACACCACAGTTTGCCCTCCATCAACCAGCAGTGCAGAGTCCAGCGCCACCTACAGGCAAGCAGGGATTGGCATTTTAACTCTGGCATGtggagttaaaaataaaatagttttaatggtGTTGTACCTCTTGTTTGGGTTGAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78620 True 320 lncRNA 0.47 2 17696777 17701254

Neighbor

gene id symbol gene type direction distance location
LOC113539922 snapc2 coding downstream 44857 17648230 ~ 17651920 (-)
ache ache,LOC108267799,LOC107668174,LOC107593784,LOC107750572,LOC107749789 coding downstream 143637 17540590 ~ 17553140 (-)
zgc:92664 cssa04h17orf49,clg07h17orf49,LOC108267800,LOC108434657,LOC103038770,LOC107561866,LOC107594707,LOC107668195,LOC107678180,LOC105902403,LOC105027650 coding downstream 160004 17533165 ~ 17536773 (-)
cd99l2 cd99l2 coding downstream 353495 17329547 ~ 17343282 (-)
dysf dysf coding downstream 517136 17102529 ~ 17179641 (-)
ap1s1 ap1s1,LOC105921790,LOC107666294,LOC103148860,LOC107593725,LOC108443977 coding upstream 36522 17737776 ~ 17747135 (-)
serpine1 serpine1,LOC101154654 coding upstream 46701 17747955 ~ 17751639 (-)
zgc:77439 LOC108268285,LOC108443975,LOC107666303,LOC107561800,LOC107750567,LOC107669018 coding upstream 63894 17765148 ~ 17769886 (-)
trnas-uga NA coding upstream 69896 17771150 ~ 17771231 (-)
gal3st4 gal3st4,LOC108443973,LOC107593694 coding upstream 141900 17843154 ~ 17853369 (-)
G66311 NA non-coding downstream 9679 17686886 ~ 17687098 (-)
G66310 NA non-coding downstream 10543 17686021 ~ 17686234 (-)
G66274 NA non-coding downstream 58791 17571331 ~ 17637986 (-)
LOC117597047 snapc2 non-coding downstream 104307 17591839 ~ 17592470 (-)
LOC113539942 NA non-coding downstream 243072 17446761 ~ 17453705 (-)
G66349 NA non-coding upstream 97868 17799122 ~ 17812526 (-)
G66350 NA non-coding upstream 100412 17801666 ~ 17809014 (-)
G66355 NA non-coding upstream 162756 17864010 ~ 17864883 (-)
G66387 NA non-coding upstream 313890 18015144 ~ 18020809 (-)
G66651 NA non-coding upstream 685307 18386561 ~ 18386990 (-)
G66281 NA other downstream 61909 17593748 ~ 17634868 (-)
rnaseka LOC108267746 other downstream 252589 17439477 ~ 17444188 (-)
G66053 NA other downstream 294313 17400594 ~ 17402464 (-)
bmp15 LOC108267203 other downstream 1091060 16603809 ~ 16605717 (-)
leap2 LOC100304644 other downstream 1102272 16592562 ~ 16594505 (-)
map11 c7h7orf43,cunh7orf43,si:dkey-3k24.5,LOC107687048,LOC107594676,LOC107754664,LOC107561780,LOC105895567 other upstream 90972 17792226 ~ 17839915 (-)
LOC113540242 adamtsl1 other upstream 1348896 19050150 ~ 19155221 (-)
zgc:112271 bola2,LOC105907194,LOC108436240,LOC105020731,LOC107569065,LOC106511278 other upstream 2178714 19879968 ~ 19881640 (-)
G67587 NA other upstream 2186925 19888179 ~ 19888726 (-)
LOC113539792 LOC108267751,LOC108440128 other upstream 2218226 19919480 ~ 19943834 (-)

Expression


Co-expression Network