G66349


Basic Information

Item Value
gene id G66349
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17799122 ~ 17812526 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU78672
TGACTTTTGCGTGACAGACAGCAAATGGGCCTTTGCTGTCCAATATGATTCCACAGTAAGCCGGACTCTCATAAAGGTCCTGTTCTGTGTCTGTGCAGTCTGGGATTGGGTCGGGTGAGGGTTTATTACAGCTGAAATGTAAGTGGAATAAGTGTTACTGCGCTGTCATTGTGCAGACAATGGAGGGAGTAAGGTATACCCAATCCCtctgtatatatacaatacaaaacCAGTGGCTCACTCAGGGTTTGTGTTCCAGCTGTTGCCAAACTCAGTTGGACTGTTGACCAGTTCACCGGAGGGGGTACGGAAGTCATCCTTAATGTTGCCATTATAGTctcc

Function

GO:

id name namespace
GO:0006030 chitin metabolic process biological_process
GO:0006032 chitin catabolic process biological_process
GO:0006040 amino sugar metabolic process biological_process
GO:0042737 drug catabolic process biological_process
GO:0046348 amino sugar catabolic process biological_process
GO:1901071 glucosamine-containing compound metabolic process biological_process
GO:1901072 glucosamine-containing compound catabolic process biological_process
GO:1901136 carbohydrate derivative catabolic process biological_process
GO:0006022 aminoglycan metabolic process biological_process
GO:0006026 aminoglycan catabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78672 True 342 lncRNA 0.47 3 17799122 17812526

Neighbor

gene id symbol gene type direction distance location
trnas-uga NA coding downstream 27891 17771150 ~ 17771231 (-)
zgc:77439 LOC108268285,LOC108443975,LOC107666303,LOC107561800,LOC107750567,LOC107669018 coding downstream 29236 17765148 ~ 17769886 (-)
serpine1 serpine1,LOC101154654 coding downstream 47483 17747955 ~ 17751639 (-)
ap1s1 ap1s1,LOC105921790,LOC107666294,LOC103148860,LOC107593725,LOC108443977 coding downstream 51987 17737776 ~ 17747135 (-)
LOC113539922 snapc2 coding downstream 147202 17648230 ~ 17651920 (-)
gal3st4 gal3st4,LOC108443973,LOC107593694 coding upstream 30628 17843154 ~ 17853369 (-)
her8a her8a,LOC108267186,LOC108262021,LOC107750660,LOC107563304,LOC107754663,LOC107666285 coding upstream 56101 17868627 ~ 17870914 (-)
LOC113539930 LOC108268343 coding upstream 62641 17875167 ~ 17880384 (-)
mblac1 mblac1 coding upstream 67989 17880515 ~ 17883360 (-)
sox19b LOC108267652 coding upstream 93007 17905533 ~ 17907890 (-)
G66318 NA non-coding downstream 97868 17696777 ~ 17701254 (-)
G66311 NA non-coding downstream 112024 17686886 ~ 17687098 (-)
G66310 NA non-coding downstream 112888 17686021 ~ 17686234 (-)
G66274 NA non-coding downstream 161136 17571331 ~ 17637986 (-)
LOC117597047 snapc2 non-coding downstream 206652 17591839 ~ 17592470 (-)
G66355 NA non-coding upstream 51484 17864010 ~ 17864883 (-)
G66387 NA non-coding upstream 202618 18015144 ~ 18020809 (-)
G66651 NA non-coding upstream 574035 18386561 ~ 18386990 (-)
LOC113539972 NA non-coding upstream 686825 18499351 ~ 18514718 (-)
G67016 NA non-coding upstream 1134792 18947318 ~ 18947539 (-)
G66281 NA other downstream 164254 17593748 ~ 17634868 (-)
rnaseka LOC108267746 other downstream 354934 17439477 ~ 17444188 (-)
G66053 NA other downstream 396658 17400594 ~ 17402464 (-)
bmp15 LOC108267203 other downstream 1193405 16603809 ~ 16605717 (-)
leap2 LOC100304644 other downstream 1204617 16592562 ~ 16594505 (-)
LOC113540242 adamtsl1 other upstream 1237624 19050150 ~ 19155221 (-)
zgc:112271 bola2,LOC105907194,LOC108436240,LOC105020731,LOC107569065,LOC106511278 other upstream 2067442 19879968 ~ 19881640 (-)
G67587 NA other upstream 2075653 19888179 ~ 19888726 (-)
LOC113539792 LOC108267751,LOC108440128 other upstream 2106954 19919480 ~ 19943834 (-)
snrpf snrpf,LOC106609479,LOC107738052 other upstream 2150056 19962582 ~ 19965851 (-)

Expression


Co-expression Network