G66387


Basic Information

Item Value
gene id G66387
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 18015144 ~ 18020809 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU78732
AATAAGGCTAAATGCCGCTTACCGCTTTAACGTGAAGTTCAGCCACCACTTTGACTGCTTTCTGAGGCATTGCTCAAATATGTCCAGTAATTCAGAAGTTCGGGTTTACTTGAGAAACTAAAACTCTGACTTTTTGAACGTTATGCCAGCTAATTACAGCACGACGGATATTCAAGATAGCGTCGCGTTTCCATGGTATTTCATAGTATTTATATTGGAGacttttattttccctttaCGAGGAACTACACACCGGAAATTGAAATGGGGTTGTTGGGTTTTGTAGTCTTTATCGTGAGGCCCTTGTTAACAGCTTTCATACCAATATAATCAgatgtgtgttgtatttttatgACGGCAGCCTAACTGAAAACAGTACAACGTTACCATGTACTTGGAATATTAATGCAGATGTTCAGTAACAGTGGTGTAAGTTAGTACAGGGAAAAGTAATGCCAAATTTATTAAGTACACATAAGCCAGGTAGAAAAGCTCATACTAATCAATATGCCATTTTAATACATCTGTGTCTAGCACAGGattatacactacatggccaaaaggttgtggacatctaaccatcacacccatatgtgctttttgaacatcctatttcATATTTAGTCTCCtctttttaatgttataataagctccactcttctgtgaaggctttgcactacattttggagcatggctgtggggagtTTTTCATTCAgcctcaagagcattagtgaggcaggtactgatgttgtgtgagaaggtctggggtgcagtctgtgttccagttcatctcaaaggtgatGTAGTATATAGTGTACCAGTTCTCAGCATTGATGTGTATTTAAATTCAGCAGTGTATTTATCAACCTATTTGAACATGCCTACAAGTGTTTGAATATTTAAGTGTATTCATAAAGAGAATCAACTGCAAGctaaaataattattcagtGGCCCAAAGCTCAATGTCTTAAGACTGTAGAGTTAATTTCACCTAAAACTACAGTCAAATGAACCCATTAGTCAAAAACAATTTGAAGAACCCTGTCCGGATATTTCTTCCTGattttctctccctctgacCGCCTCTTCTCAAACGGATGCTCCTCTTTATACTGGAACTTCATCGCAGCTCAGTGTCAGAGACTGCAATGTGATTAAATGTCGCTTATAAACGGTGATCTTTAATGCCAAAGCTGGACAGTTCAACTAGCAGCGCTGTTTTTGAGACAGTAGATTGCCGCGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78732 True 1245 lncRNA 0.39 2 18015144 18020809

Neighbor

gene id symbol gene type direction distance location
phf23b phf23,LOC108413721,LOC107687050 coding downstream 25389 17982019 ~ 17989755 (-)
LOC113540166 LOC108268288 coding downstream 42325 17969195 ~ 17972819 (-)
LOC113540164 plscr3,LOC108267765,LOC103046260,LOC102780386,LOC106577560 coding downstream 54212 17951016 ~ 17960932 (-)
senp3b LOC108267653 coding downstream 86923 17919246 ~ 17928221 (-)
eif4a1a if4a1,eif4a1,eif4a1a,eif4a1b,LOC108443969,LOC107561738,LOC107687036,LOC107704251,LOC107593628,LOC107599941 coding downstream 96271 17912572 ~ 17918873 (-)
slc1a1 slc1a1,LOC107691854,LOC107659129,LOC107552979,LOC107561518 coding upstream 7868 18028677 ~ 18040250 (-)
tspan5a LOC103038323,LOC107740922,LOC107659128,LOC107561515,LOC106577600,LOC107691852,LOC105022115,LOC107738333,LOC108437089,LOC102195201 coding upstream 63347 18084156 ~ 18107424 (-)
LOC113540602 LOC108267271 coding upstream 88093 18108902 ~ 18112004 (-)
LOC113539796 LOC108268300 coding upstream 122498 18143307 ~ 18177770 (-)
myoz2a LOC108267175 coding upstream 166834 18187643 ~ 18195774 (-)
G66355 NA non-coding downstream 150261 17864010 ~ 17864883 (-)
G66349 NA non-coding downstream 202618 17799122 ~ 17812526 (-)
G66350 NA non-coding downstream 206130 17801666 ~ 17809014 (-)
G66318 NA non-coding downstream 313890 17696777 ~ 17701254 (-)
G66311 NA non-coding downstream 328046 17686886 ~ 17687098 (-)
G66651 NA non-coding upstream 365752 18386561 ~ 18386990 (-)
LOC113539972 NA non-coding upstream 478542 18499351 ~ 18514718 (-)
G67016 NA non-coding upstream 926509 18947318 ~ 18947539 (-)
G67454 NA non-coding upstream 1307539 19328348 ~ 19340529 (-)
G67453 NA non-coding upstream 1312265 19333074 ~ 19339158 (-)
map11 c7h7orf43,cunh7orf43,si:dkey-3k24.5,LOC107687048,LOC107594676,LOC107754664,LOC107561780,LOC105895567 other downstream 175229 17792226 ~ 17839915 (-)
G66281 NA other downstream 380276 17593748 ~ 17634868 (-)
rnaseka LOC108267746 other downstream 570956 17439477 ~ 17444188 (-)
G66053 NA other downstream 612680 17400594 ~ 17402464 (-)
bmp15 LOC108267203 other downstream 1409427 16603809 ~ 16605717 (-)
LOC113540242 adamtsl1 other upstream 1029341 19050150 ~ 19155221 (-)
zgc:112271 bola2,LOC105907194,LOC108436240,LOC105020731,LOC107569065,LOC106511278 other upstream 1859159 19879968 ~ 19881640 (-)
G67587 NA other upstream 1867370 19888179 ~ 19888726 (-)
LOC113539792 LOC108267751,LOC108440128 other upstream 1898671 19919480 ~ 19943834 (-)
snrpf snrpf,LOC106609479,LOC107738052 other upstream 1941773 19962582 ~ 19965851 (-)

Expression


Co-expression Network