G66426


Basic Information

Item Value
gene id G66426
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 18111685 ~ 18111915 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU78778
GGGACCGACAGTTTATTGATGTgaagcatctccaaaatggcctTGCTAAGATCCCTGTTTTCAAAATCTTCAGGAAGATTCTCTTCAAACTTCAAGCCACTGACAACATTCAGGGTTATAACCGTATACAAacataaaaatcttttaaactcCATGTTTAAAAGCTTAACACAGATAAAGAGGAGATTCTTGGTCTGTACCTCACAAGATGAAATAGCAGTAGGAAAGCTG

Function

GO:

id name namespace
GO:0061448 connective tissue development biological_process
GO:0001501 skeletal system development biological_process
GO:0051216 cartilage development biological_process
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
ko04151 PI3K-Akt signaling pathway
ko04512 ECM-receptor interaction
ko04510 Focal adhesion
ko04974 Protein digestion and absorption
ko05165 Human papillomavirus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU78778 True 231 lncRNA 0.38 1 18111685 18111915

Neighbor

gene id symbol gene type direction distance location
rap1gds1 rap1gds1,LOC107552992 coding upstream 29255 18049289 ~ 18082430 (+)
spata6l spata6l coding upstream 83634 18020211 ~ 18028051 (+)
gabarapb gabarap,gabarapb,LOC105911381,LOC106577557,LOC105008592 coding upstream 92606 18015129 ~ 18019079 (+)
elp5 elp5 coding upstream 113469 17992640 ~ 17998216 (+)
LOC113540162 LOC108268287 coding upstream 143374 17966324 ~ 17968311 (+)
sec24d sec24d,LOC103036498,LOC107732696 coding downstream 109709 18221624 ~ 18243797 (+)
gba3 LOC108267130,LOC108437095 coding downstream 314443 18426358 ~ 18430359 (+)
sod3a NA coding downstream 737250 18849165 ~ 18851580 (+)
ppp1r15a NA coding downstream 839132 18951047 ~ 18954000 (+)
LOC113540597 col25a1,LOC102793499 coding downstream 1058784 19170699 ~ 19327377 (+)
G66263 NA non-coding upstream 15102 18091588 ~ 18096583 (+)
G66237 NA non-coding upstream 119438 17990435 ~ 17992247 (+)
G66186 NA non-coding upstream 136326 17973998 ~ 17975359 (+)
G66169 NA non-coding upstream 192588 17904611 ~ 17919097 (+)
G66214 LOC108268343 non-coding upstream 234611 17873399 ~ 17877074 (+)
G66452 NA non-coding downstream 65319 18177234 ~ 18177642 (+)
G66637 NA non-coding downstream 270041 18381956 ~ 18382162 (+)
G66654 NA non-coding downstream 318647 18430562 ~ 18431136 (+)
G66670 NA non-coding downstream 379457 18491372 ~ 18491581 (+)
G66754 NA non-coding downstream 557127 18669042 ~ 18669250 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other upstream 100723 18000158 ~ 18010962 (+)
LOC113539940 NA other upstream 491606 17609492 ~ 17620079 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other upstream 710297 17335497 ~ 17401388 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other upstream 1740728 16367956 ~ 16370957 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other upstream 1792519 16310213 ~ 16319166 (+)
frem1a frem1 other downstream 1518 18113433 ~ 18143631 (+)
G66492 LOC108267609,LOC108437090 other downstream 85397 18197312 ~ 18208564 (+)
G66864 NA other downstream 744541 18856456 ~ 18858652 (+)
dock11 dock11,LOC107683516 other downstream 1878769 19990684 ~ 20067220 (+)
fcer1g LOC100305060 other downstream 2035880 20147795 ~ 20154777 (+)

Expression


Co-expression Network