G66452



Basic Information


Item Value
gene id G66452
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 18177234 ~ 18177642 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>TU78810
CGTAAAAATGGCGAGGAAAGTTTGCTCAAAAGACAGCTAATCAGTATCGCGACATACTCACCATGTGGACGACTTTCCAGGATAATTTCTGTATCTTCTCGCCTCTTTCCGATCGACTTAATCAGCGAATATTCCCAAGCGTCTACATTGTTTCTCGGTGTCAGCTGCTGAAGTGTCAAAGGCGGAAGAGCCGAGTAACTCAGGATTTCAGTATAACACTGAATCGCAGCGTCCCAGTAGGATTGCAGCTCCCTCTacagtgagtgtttgtgtgcgGCGGTAGTGAGCCAAAGTCGACTCG

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU78810 True 301 lncRNA 0.48 2 18177234 18177642
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Neighbor


gene id symbol gene type direction distance location
rap1gds1 rap1gds1,LOC107552992 coding upstream 94804 18049289 ~ 18082430 (+)
spata6l spata6l coding upstream 149183 18020211 ~ 18028051 (+)
gabarapb gabarap,gabarapb,LOC105911381,LOC106577557,LOC105008592 coding upstream 158155 18015129 ~ 18019079 (+)
elp5 elp5 coding upstream 179018 17992640 ~ 17998216 (+)
LOC113540162 LOC108268287 coding upstream 208923 17966324 ~ 17968311 (+)
sec24d sec24d,LOC103036498,LOC107732696 coding downstream 43982 18221624 ~ 18243797 (+)
gba3 LOC108267130,LOC108437095 coding downstream 248716 18426358 ~ 18430359 (+)
sod3a NA coding downstream 671523 18849165 ~ 18851580 (+)
ppp1r15a NA coding downstream 773405 18951047 ~ 18954000 (+)
LOC113540597 col25a1,LOC102793499 coding downstream 993057 19170699 ~ 19327377 (+)
G66426 NA non-coding upstream 65319 18111685 ~ 18111915 (+)
G66263 NA non-coding upstream 80651 18091588 ~ 18096583 (+)
G66237 NA non-coding upstream 184987 17990435 ~ 17992247 (+)
G66186 NA non-coding upstream 201875 17973998 ~ 17975359 (+)
G66169 NA non-coding upstream 258137 17904611 ~ 17919097 (+)
G66637 NA non-coding downstream 204314 18381956 ~ 18382162 (+)
G66654 NA non-coding downstream 252920 18430562 ~ 18431136 (+)
G66670 NA non-coding downstream 313730 18491372 ~ 18491581 (+)
G66754 NA non-coding downstream 491400 18669042 ~ 18669250 (+)
G66855 NA non-coding downstream 650537 18828179 ~ 18833827 (+)
frem1a frem1 other upstream 33603 18113433 ~ 18143631 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other upstream 166272 18000158 ~ 18010962 (+)
LOC113539940 NA other upstream 557155 17609492 ~ 17620079 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other upstream 775846 17335497 ~ 17401388 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other upstream 1806277 16367956 ~ 16370957 (+)
G66492 LOC108267609,LOC108437090 other downstream 19670 18197312 ~ 18208564 (+)
G66864 NA other downstream 678814 18856456 ~ 18858652 (+)
dock11 dock11,LOC107683516 other downstream 1813042 19990684 ~ 20067220 (+)
fcer1g LOC100305060 other downstream 1970153 20147795 ~ 20154777 (+)
G68232 LOC108267516 other downstream 2842616 21020258 ~ 21033753 (+)

Expression


G66452 Expression in all Baseline Samples

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
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G66452 Expression in each Bioproject

Bar chart with 3 bars.
G66452 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 10.
End of interactive chart.

Co-expression Network