G66670


Basic Information

Item Value
gene id G66670
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 18491372 ~ 18491581 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU79045
GTTTTTGCACATActatatatggccaaaagtttgtgcacacctgaccatcacacccatatatactTTTCGAACATCCCATTtaagatttagtccccctttgctgttataataacctccactcttctgggaaggatttccactagagtttggagtgTGGATGTGGGGatttttgtgctcattcagccacaagagcattagtgaggtcaggc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU79045 True 210 lncRNA 0.42 1 18491372 18491581

Neighbor

gene id symbol gene type direction distance location
gba3 LOC108267130,LOC108437095 coding upstream 61013 18426358 ~ 18430359 (+)
sec24d sec24d,LOC103036498,LOC107732696 coding upstream 247575 18221624 ~ 18243797 (+)
rap1gds1 rap1gds1,LOC107552992 coding upstream 408942 18049289 ~ 18082430 (+)
spata6l spata6l coding upstream 463321 18020211 ~ 18028051 (+)
gabarapb gabarap,gabarapb,LOC105911381,LOC106577557,LOC105008592 coding upstream 472293 18015129 ~ 18019079 (+)
sod3a NA coding downstream 357584 18849165 ~ 18851580 (+)
ppp1r15a NA coding downstream 459466 18951047 ~ 18954000 (+)
LOC113540597 col25a1,LOC102793499 coding downstream 679118 19170699 ~ 19327377 (+)
etnppl etnppl coding downstream 836450 19328031 ~ 19338707 (+)
trmt44 trmt44,LOC107710993 coding downstream 862799 19354380 ~ 19372755 (+)
G66654 NA non-coding upstream 60236 18430562 ~ 18431136 (+)
G66637 NA non-coding upstream 109210 18381956 ~ 18382162 (+)
G66452 NA non-coding upstream 313730 18177234 ~ 18177642 (+)
G66426 NA non-coding upstream 379457 18111685 ~ 18111915 (+)
G66263 NA non-coding upstream 394789 18091588 ~ 18096583 (+)
G66754 NA non-coding downstream 177461 18669042 ~ 18669250 (+)
G66855 NA non-coding downstream 336598 18828179 ~ 18833827 (+)
G66865 NA non-coding downstream 367461 18859042 ~ 18863417 (+)
G66888 NA non-coding downstream 418065 18909646 ~ 18910488 (+)
G66887 NA non-coding downstream 419476 18911057 ~ 18911397 (+)
G66492 LOC108267609,LOC108437090 other upstream 282808 18197312 ~ 18208564 (+)
frem1a frem1 other upstream 347741 18113433 ~ 18143631 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other upstream 480410 18000158 ~ 18010962 (+)
LOC113539940 NA other upstream 871293 17609492 ~ 17620079 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other upstream 1089984 17335497 ~ 17401388 (+)
G66864 NA other downstream 364875 18856456 ~ 18858652 (+)
dock11 dock11,LOC107683516 other downstream 1499103 19990684 ~ 20067220 (+)
fcer1g LOC100305060 other downstream 1656214 20147795 ~ 20154777 (+)
G68232 LOC108267516 other downstream 2528677 21020258 ~ 21033753 (+)
plag1 plag1,LOC107570635 other downstream 2822637 21314218 ~ 21323967 (+)

Expression


Co-expression Network