G66888


Basic Information

Item Value
gene id G66888
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 18909646 ~ 18910488 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU79288
CCACTACACATCCAAATGTACAGAGTGTCTGAAAAATCAGGCGTAACACGAAGTACCAAGTAGCACTATCTCTACCCTCTCATCCAATATTAATGCCATTTTTACCtgtaaggaaataaataaataaatacaaaaataagtgttaataaataagtaaataaataataaatacgaAATCACGTATATACAGCTTAAAACCCACTTGTTTCTGACTTTTCGTACACCCTGTAGTTGCTGCATAATGAGGCTTAAACACTTAGCAACAAAGGTTCTGTagtggttctttggatagttaagagTTTTAAGCAAGGGGTTTTGTTCGGAAACCTCTGAAAGCGAAACCTTTTTGTTATAAAGCTTAACATACTGTAGAATCTTTAATAGCTCCCCAGAGAGGCAAACCATTCTCtctacagaaaaaagaaaagataccTTTAGGGTGACACAATGCCACAGTGGTTAGTTTTACTGCTTCACAGCTCGAAGGTCCCTGCTTCAATCctaagcttgggttactgtctgtgtggtgttttgtacactctccctgtgtccatggtTTTTTTTCCGGGTACTCCAGGTTGcttcccacttcccaaaaacatgacgATAGGTGGACTTGTTATGCTACATTGCCtgaaggtgtgaatgtgtgtgtgtatgttgctcTGAagtggactggtgtcccatccattGTATGTGTAATGCAGCGAAACAGAAAAATGAGACAACATTGTATGTGTAATGCGATCAGTTGCTGTGTACCAGATAATGAACTTAGGCAAGTCCATTTATCGGACATTACTGGacattttcaaattattttatcactgcaagtctgttata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU79288 True 843 lncRNA 0.38 1 18909646 18910488

Neighbor

gene id symbol gene type direction distance location
sod3a NA coding upstream 58066 18849165 ~ 18851580 (+)
gba3 LOC108267130,LOC108437095 coding upstream 479287 18426358 ~ 18430359 (+)
sec24d sec24d,LOC103036498,LOC107732696 coding upstream 665849 18221624 ~ 18243797 (+)
rap1gds1 rap1gds1,LOC107552992 coding upstream 827216 18049289 ~ 18082430 (+)
spata6l spata6l coding upstream 881595 18020211 ~ 18028051 (+)
ppp1r15a NA coding downstream 40559 18951047 ~ 18954000 (+)
LOC113540597 col25a1,LOC102793499 coding downstream 260211 19170699 ~ 19327377 (+)
etnppl etnppl coding downstream 417543 19328031 ~ 19338707 (+)
trmt44 trmt44,LOC107710993 coding downstream 443892 19354380 ~ 19372755 (+)
gpr78b gpr78,LOC108267410,LOC103025717,LOC107554869,LOC107397001 coding downstream 478117 19388605 ~ 19393118 (+)
G66865 NA non-coding upstream 46229 18859042 ~ 18863417 (+)
G66855 NA non-coding upstream 75819 18828179 ~ 18833827 (+)
G66754 NA non-coding upstream 240396 18669042 ~ 18669250 (+)
G66670 NA non-coding upstream 418065 18491372 ~ 18491581 (+)
G66654 NA non-coding upstream 478510 18430562 ~ 18431136 (+)
G66887 NA non-coding downstream 569 18911057 ~ 18911397 (+)
LOC113540244 NA non-coding downstream 210350 19120838 ~ 19122624 (+)
G67205 rpl34,LOC107573163,LOC107566275,LOC107681344 non-coding downstream 435356 19345844 ~ 19351904 (+)
G67208 NA non-coding downstream 463068 19373556 ~ 19375720 (+)
G67209 NA non-coding downstream 472065 19382553 ~ 19451392 (+)
G66864 NA other upstream 50994 18856456 ~ 18858652 (+)
G66492 LOC108267609,LOC108437090 other upstream 701082 18197312 ~ 18208564 (+)
frem1a frem1 other upstream 766015 18113433 ~ 18143631 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other upstream 898684 18000158 ~ 18010962 (+)
LOC113539940 NA other upstream 1289567 17609492 ~ 17620079 (+)
dock11 dock11,LOC107683516 other downstream 1080196 19990684 ~ 20067220 (+)
fcer1g LOC100305060 other downstream 1237307 20147795 ~ 20154777 (+)
G68232 LOC108267516 other downstream 2109770 21020258 ~ 21033753 (+)
plag1 plag1,LOC107570635 other downstream 2403730 21314218 ~ 21323967 (+)
mettl4 mettl4 other downstream 2718588 21629076 ~ 21640157 (+)

Expression


Co-expression Network