G67016


Basic Information

Item Value
gene id G67016
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 18947318 ~ 18947539 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU79437
CTAGTGTTTAAGTGCATGGACATAATTCACCTTTAAGTAAATTACTGATGACAACTTGTTATGAACTTGATATTAAACTATTCTTCTTGTGAATAGAAAGGTACATGACAGATTTGAGGAAAGTAGATGAATGTCTGGGGTAAAAAGAATCATGCTGATGCCTAAAgacatgaaacaaaacacaggaaTGTTTGAATGAAGAGTTTTGTATTGGAAGAATGT

Function

GO:

id name namespace
GO:0048368 lateral mesoderm development biological_process
GO:0005102 signaling receptor binding molecular_function
GO:0005179 hormone activity molecular_function
GO:0008227 G protein-coupled amine receptor activity molecular_function
GO:0030545 receptor regulator activity molecular_function
GO:0048018 receptor ligand activity molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU79437 True 222 lncRNA 0.32 1 18947318 18947539

Neighbor

gene id symbol gene type direction distance location
aco1 aco1,LOC107601170,LOC107559949,LOC107675411 coding downstream 4134 18926146 ~ 18943184 (-)
sepsecs sepsecs,LOC107559948,LOC107601169,LOC107675416 coding downstream 21795 18910752 ~ 18925523 (-)
lgi2a lgi2,lgi2a,LOC107675415,LOC107691834,LOC107728668,LOC107601159,LOC107559946 coding downstream 39947 18899283 ~ 18907371 (-)
LOC113540167 LOC108268090 coding downstream 51070 18886574 ~ 18896248 (-)
ccdc149a ccdc149,LOC108268063,LOC100691566,LOC107671163,LOC101478871,LOC102778358 coding downstream 64371 18866514 ~ 18882947 (-)
acer2 acer2,LOC107601172,LOC107691831,LOC107675399,LOC107559953 coding upstream 7173 18954712 ~ 18963749 (-)
dennd4c dennd4c coding upstream 16915 18964454 ~ 19014305 (-)
haus6 haus6 coding upstream 67817 19015356 ~ 19023907 (-)
LOC113540749 NA coding upstream 69284 19016823 ~ 19016953 (-)
LOC113540750 NA coding upstream 69731 19017270 ~ 19017400 (-)
LOC113539972 NA non-coding downstream 432600 18499351 ~ 18514718 (-)
G66651 NA non-coding downstream 560328 18386561 ~ 18386990 (-)
G66387 NA non-coding downstream 926509 18015144 ~ 18020809 (-)
G66355 NA non-coding downstream 1082435 17864010 ~ 17864883 (-)
G66349 NA non-coding downstream 1134792 17799122 ~ 17812526 (-)
G67454 NA non-coding upstream 380809 19328348 ~ 19340529 (-)
G67453 NA non-coding upstream 385535 19333074 ~ 19339158 (-)
G67527 NA non-coding upstream 657953 19605492 ~ 19656442 (-)
G67528 NA non-coding upstream 668909 19616448 ~ 19629949 (-)
G67535 NA non-coding upstream 821818 19769357 ~ 19824919 (-)
map11 c7h7orf43,cunh7orf43,si:dkey-3k24.5,LOC107687048,LOC107594676,LOC107754664,LOC107561780,LOC105895567 other downstream 1107403 17792226 ~ 17839915 (-)
G66281 NA other downstream 1312450 17593748 ~ 17634868 (-)
rnaseka LOC108267746 other downstream 1503130 17439477 ~ 17444188 (-)
G66053 NA other downstream 1544854 17400594 ~ 17402464 (-)
bmp15 LOC108267203 other downstream 2341601 16603809 ~ 16605717 (-)
LOC113540242 adamtsl1 other upstream 102611 19050150 ~ 19155221 (-)
zgc:112271 bola2,LOC105907194,LOC108436240,LOC105020731,LOC107569065,LOC106511278 other upstream 932429 19879968 ~ 19881640 (-)
G67587 NA other upstream 940640 19888179 ~ 19888726 (-)
LOC113539792 LOC108267751,LOC108440128 other upstream 971941 19919480 ~ 19943834 (-)
snrpf snrpf,LOC106609479,LOC107738052 other upstream 1015043 19962582 ~ 19965851 (-)

Expression


Co-expression Network