LOC113540244


Basic Information

Item Value
gene id LOC113540244
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 19120838 ~ 19122624 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU79518
GCTTGGGCTCGTTTACGAGACTTTTGGATTTTAAGCTCTGAAGAATTCACTTAAATGAAGGAAGAAAATGAAGGACGCAGGCTGCAATTCAACAGGAGTGAGGAAGAATCACAAAGATTTTATTGCAAAATCAGTGGAGAGTACTCTGCCAAAGAACCTAATACATTGCCTACACAAGCATGTTCACAGAGTGCATTCGAAAGACCTGGATGAAGTTTTTGGGAAAAACAAATCCCTGACCTAAACAAGAATGCTGTATGACTGGGATCTGTAAAAATCTGCAGATTTATATTTGAGAGGTATATTTGAGTTTTTGGCTGCGCATGCCTCACTAGCACACTGACCTAAGCTTCTAGAAGAAATGGCCATGAAATAGGCcaaaaatgtcttaaatatgTATTGAAATGTACTGTACTACTATACTTCTATACTATAGCTTTATGCACAACTCAAAGCACTGCCATGTAGGCCATACTGGATTTTACCTCCATGGAACTCTCAACAGCTTATACACATGAAGCAAACTGAGGATGGTTGATGCCTGGAGGGAACCTTTGGAATGATATCATGTTCCAGTTAAACTTTAACAGGACCCTTTGACAGAAAACCTCAACCGAGTGAAGTGGTACAAAAGGAAGAGACATGATCGCAGTACTGTTTGTTCTGCTGTAAAACAACACTGTACAATGTCTCCTGAGCAAGAAGAAGCAATGACTTGTTGATTCTATGTTAAAAAGAGAAATTTTCAGTTCTCAGTCACTGATGAGAAACTTGTGTCATGCAAAGACAAATGCTTCCAAACAGTTATACATACGTTATATGAGTGAGTAGCCAAATATAATGAACCACTGAGTGAtgctataacatttaatttatagttAATAACAGTTAATTTAACCGAATatgcattttagcattttattaaacaatgcCTTTAACATAATAACAACCACAGATCTTTGGACAATGGACTTAGGACAAGGCACTTAACTGTAAAGGGATTACATGACAGGGCTTACCTTCGAACAGAGACATGTAGCAATTAATgaattaaccccttaaactccacACTGGTTATTGCAACTACTTTGTTTCCTATTCGTTGCACTAtagacattaaatatgttttaaggtGAATAACTGAATATCAAGCTGCAACGTAATGTGGTTAAACTACTGGAACTATTGTGTTCTTTTTATGTACAGTGCTTATTTCTGATTCTATTCATGaatattctttattaatatttacatcagAATTTATTGCAAAATTCttaaagattttgtttttaatcccaTGGGATTCTTTTGTTTCTACTGGATATATTGCATTTTGgcaaaaaaagttttgtttctagacaaaaaatatatatgcaatatatatttgcataaatatatgtgtgtcttTAGACATGCCTCTGCTTAAATTAATGTAaagaatatgatgaaaaatactTGTGATGGTGAGTAgtggaaaacaaatgaaaataaaaa
>XR_003404012.2
AATGCACTTAGGTAGAGCAGTGCTTGGGCTCGTTTACGAGACTTTTGGATTTTAAGCTCTGAAGAATTCACTTAAATGAAGGAAGAAAATGAAGGACGCAGGCTGCAATTCAACAGGAGTGAGGAAGAATCACAAAGATTTTATTGCAAAATCAGTGGAGAGTACTCTGCCAAAGAACCTAATACATTGCCTACACAAGCATGTTCACAGAGTGCATTCGAAAGACCTGGATGAAGTTTTTGGGAAAAACAAATCCCTGACCTAAACAAGAATGCTGTATGACTGGGATCTGTAAAAATCTGCAGATTTATATTTGAGAGGTATATTTGAGTTTTTGGCTGCGCATGCCTCACTAGCACACTGACCTAAGCTTCTAGAAGAAATGGCCATGAAATAGGCcaaaaatgtcttaaatatgTATTGAAATGTACTGTACTACTATACTTCTATACTATAGCTTTATGCACAACTCAAAGCACTGCCATGTAGGCCATACTGGATTTTACCTCCATGGAACTCTCAACAGCTTATACACATGAAGCAAACTGAGGATGGTTGATGCCTGGAGGGAACCTTTGGAATGATATCATGTTCCAGTTAAACTTTAACAGGACCCTTTGACAGAAAACCTCAACCGAGTGAAGTGGTACAAAAGGAAGAGACATGATCGCAGTACTGTTTGTTCTGCTGTAAAACAACACTGTACAATGTCTCCTGAGCAAGAAGAAGCAATGACTTGTTGATTCTATGTTAAAAAGAGAAATTTTCAGTTCTCAGTCACTGATGAGAAACTTGTGTCATGCAAAGACAAATGCTTCCAAACAGTTATACATACGTTATATGAGTGAGTAGCCAAATATAATGAACCACTGAGTGAtgctataacatttaatttatagttAATAACAGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU79518 True 1494 lncRNA 0.34 2 19120859 19122624
XR_003404012.2 False 911 lncRNA 0.38 2 19120838 19122020

Neighbor

gene id symbol gene type direction distance location
ppp1r15a NA coding upstream 166838 18951047 ~ 18954000 (+)
sod3a NA coding upstream 269258 18849165 ~ 18851580 (+)
gba3 LOC108267130,LOC108437095 coding upstream 690479 18426358 ~ 18430359 (+)
sec24d sec24d,LOC103036498,LOC107732696 coding upstream 877041 18221624 ~ 18243797 (+)
rap1gds1 rap1gds1,LOC107552992 coding upstream 1038408 18049289 ~ 18082430 (+)
LOC113540597 col25a1,LOC102793499 coding downstream 48075 19170699 ~ 19327377 (+)
etnppl etnppl coding downstream 205407 19328031 ~ 19338707 (+)
trmt44 trmt44,LOC107710993 coding downstream 231756 19354380 ~ 19372755 (+)
gpr78b gpr78,LOC108267410,LOC103025717,LOC107554869,LOC107397001 coding downstream 265981 19388605 ~ 19393118 (+)
LOC113540663 cpz coding downstream 271531 19394155 ~ 19407627 (+)
G66887 NA non-coding upstream 209441 18911057 ~ 18911397 (+)
G66888 NA non-coding upstream 210350 18909646 ~ 18910488 (+)
G66865 NA non-coding upstream 257421 18859042 ~ 18863417 (+)
G66855 NA non-coding upstream 287011 18828179 ~ 18833827 (+)
G66754 NA non-coding upstream 451588 18669042 ~ 18669250 (+)
G67205 rpl34,LOC107573163,LOC107566275,LOC107681344 non-coding downstream 223220 19345844 ~ 19351904 (+)
G67208 NA non-coding downstream 250932 19373556 ~ 19375720 (+)
G67209 NA non-coding downstream 259929 19382553 ~ 19451392 (+)
G67227 LOC108267906 non-coding downstream 351871 19474495 ~ 19475474 (+)
G67236 h2afvb,H2AFZ,LOC103038819,LOC105895420,LOC101065890,LOC100694115 non-coding downstream 376585 19499209 ~ 19501228 (+)
G66864 NA other upstream 262186 18856456 ~ 18858652 (+)
G66492 LOC108267609,LOC108437090 other upstream 912274 18197312 ~ 18208564 (+)
frem1a frem1 other upstream 977207 18113433 ~ 18143631 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other upstream 1109876 18000158 ~ 18010962 (+)
LOC113539940 NA other upstream 1500759 17609492 ~ 17620079 (+)
dock11 dock11,LOC107683516 other downstream 868060 19990684 ~ 20067220 (+)
fcer1g LOC100305060 other downstream 1025171 20147795 ~ 20154777 (+)
G68232 LOC108267516 other downstream 1897634 21020258 ~ 21033753 (+)
plag1 plag1,LOC107570635 other downstream 2191594 21314218 ~ 21323967 (+)
mettl4 mettl4 other downstream 2506452 21629076 ~ 21640157 (+)

Expression


Co-expression Network