G67208


Basic Information

Item Value
gene id G67208
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 19373556 ~ 19375720 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU79647
AGAAACATGGCTCAgtgactctgtctctctctgccctgtTGAGAATAATAAGTCAAAAAGGCAGCCTgctgtttcttcctcatatggAAGAAGCTTGGCACAACTTTGAGCAGGATCCTCTGGGACCATGCTAATGAAGGCACACAGTCCTGTAGCGGTGGATTCAAAAAGCATCACAGGTTCTTTTCATCTCGACTGGGTGCTTAATAAGTCTGCAGTGTTGGGGTGGGAACTGTGGAGTAGCCCTGTAACCATCTagtgtttctctttttattgAAGTGCACACACTAAATCACAGAGCAGGCCTTTCCGTGAGAAACAGATTTGACTAACTGAGCCATCTTTGCAGTCAAAATACATGTGGTCCAAAGCAGGGCATGAAGTAActgtgatgtgtatatatacacctcACACCGTAAGACTCACTTGCTAACGTCAGTAATCTGAGCTCTGGGTCTTTATATTGCCCAAACAATAGAGAATCATGAACTGtatagaaaaaatagaaatggtTGCAACAAAACATAGCAAGTTTGCAAATCATGACTGCCCATAATCTGACATTTGTCACAACAATAACAGCAATGACCTCATATGTGGTGGATCATTTAGTCTAGACAATATCAAAGGCAGAACACCTTTTCCTTGAAGAACTGCAGACACGTTTCCCCAAGCTTGAGTAATGACAGGCGGAGAAATGGCCAGCTGTGGCTGAATCTGGGCCAGCAGGAAggatttggaagaaaaaaatgagccTGCTTCTGCCTCCGCTGAGTATTACACACTGATCTGGGGTCAGTGTTCTCTCAGTGCATGTAAAAAAGTGAGAAACATGCTGTCCTGTGATTATAAGAAGGAATTTTAATCTCAATATATATGCCGTCTCATCCAAGGTGCCATCATACCTTAGTGCAGTTAGTGTGATTTAAGAATCGCACTAATTTTAGCATGAAATAAAACACGGGGGAAAAAACAACTTGAGGGAGTTAAAGTTACAGCGCAGTGGAGAAGTTGAGATCATAAttggctctgtgtttgtgtgtgtgtgtgtgtgtgtgtaaggaaggAGAGGCGGGGAAATCAGTGTGGTCAGTCTGAGGTTATTGGCATAGTGAACTTGGTAAACATTGCTTTAGAGACATGTGAATTAATTGTTTGTGGCTGTTGAAAACATTTGGAATATTCAGAGGTCTTGCTGAGAATGTACAAGGTCATGTTCgctgctctctttctttctgtggaTAAAACGAGACAATCTGAAACCAACAGACGTCTTCCATTAACATCCTTCCTGCGTTCTCTTCTGCAAAGCAGCTTGACACGGACACACATGTGACGCCTTTGTACACTAGGAATCACAGTGAATGTTTTTACTTTCCCTAAGTGTTGAAATGTTCCACGTATGAAATCCTATGACATTTCTGAAATGCCTCAGATCAGCTGGCTGAGCTGCTATATCTGAGTATATATACTGCATCATCAATGTGACAGATAGGCACATCAGGGAGCCAGATGCAAACCCTACGCTTTCTCTGTAGCCTGTATGGCATCAGACCCAGTGCATGCTGCCAAAAGATAGAGAATGGCCGTGGGCTCTGGCCAACCAAAGACCTTATACTGCCCACACACATCTGTCGAGCTGTTACCTGAGAAAGCGATAATACACAGTGACTAAGACTCTTTCCCCTCCCTGTGACAGTACTCTCTGACACTGACTCTATCTGACAGGTCTCTTCTCACATCATCTGAGGTGGAACTTTTGTTTGAATTTACCTTTGGGCTTTACTTGGCACCGCATGCTCAGAATAGGAAGTACCTTTATTTCCATTCTGAGAGTGTCATGATCGAAGATGACGGAATTCCCTTATATTAGTTAAGGTCACGATAGTAAATGTCATGCTGGGATGCTGTATATAAATGTGAGGATGTAATATTCATTTGTGCATTCATTTTATCTATAAACTAGTACTCTTGTAAATATATCGATTAGCAGTAAACAATATGAGCTCATCTACTAAATGTGTTACCTGTCtacatttttctcttcttttgaaaatgtgcagtgccttgcataagtattcacccccttgcaCTTTTCCACAATTTGTAGTTCCACCTTCaactaaaattaatttaatttg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU79647 True 2141 lncRNA 0.42 2 19373556 19375720

Neighbor

gene id symbol gene type direction distance location
trmt44 trmt44,LOC107710993 coding upstream 801 19354380 ~ 19372755 (+)
etnppl etnppl coding upstream 34849 19328031 ~ 19338707 (+)
LOC113540597 col25a1,LOC102793499 coding upstream 46179 19170699 ~ 19327377 (+)
ppp1r15a NA coding upstream 419556 18951047 ~ 18954000 (+)
sod3a NA coding upstream 521976 18849165 ~ 18851580 (+)
gpr78b gpr78,LOC108267410,LOC103025717,LOC107554869,LOC107397001 coding downstream 12885 19388605 ~ 19393118 (+)
LOC113540663 cpz coding downstream 18435 19394155 ~ 19407627 (+)
LOC113540575 slc2a4,LOC100136445,LOC100136540 coding downstream 79306 19455026 ~ 19470962 (+)
LOC113540207 eif5a,LOC107691471,LOC106608670 coding downstream 105335 19481055 ~ 19485146 (+)
LOC113539894 bank1 coding downstream 276177 19651897 ~ 19694516 (+)
G67205 rpl34,LOC107573163,LOC107566275,LOC107681344 non-coding upstream 21652 19345844 ~ 19351904 (+)
LOC113540244 NA non-coding upstream 250932 19120838 ~ 19122624 (+)
G66887 NA non-coding upstream 462159 18911057 ~ 18911397 (+)
G66888 NA non-coding upstream 463068 18909646 ~ 18910488 (+)
G66865 NA non-coding upstream 510139 18859042 ~ 18863417 (+)
G67209 NA non-coding downstream 6833 19382553 ~ 19451392 (+)
G67227 LOC108267906 non-coding downstream 98775 19474495 ~ 19475474 (+)
G67236 h2afvb,H2AFZ,LOC103038819,LOC105895420,LOC101065890,LOC100694115 non-coding downstream 123489 19499209 ~ 19501228 (+)
G67262 NA non-coding downstream 168326 19544046 ~ 19641619 (+)
G67271 NA non-coding downstream 242962 19618682 ~ 19621531 (+)
G66864 NA other upstream 514904 18856456 ~ 18858652 (+)
G66492 LOC108267609,LOC108437090 other upstream 1164992 18197312 ~ 18208564 (+)
frem1a frem1 other upstream 1229925 18113433 ~ 18143631 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other upstream 1362594 18000158 ~ 18010962 (+)
LOC113539940 NA other upstream 1753477 17609492 ~ 17620079 (+)
dock11 dock11,LOC107683516 other downstream 614964 19990684 ~ 20067220 (+)
fcer1g LOC100305060 other downstream 772075 20147795 ~ 20154777 (+)
G68232 LOC108267516 other downstream 1644538 21020258 ~ 21033753 (+)
plag1 plag1,LOC107570635 other downstream 1938498 21314218 ~ 21323967 (+)
mettl4 mettl4 other downstream 2253356 21629076 ~ 21640157 (+)

Expression


Co-expression Network