G67209


Basic Information

Item Value
gene id G67209
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 19382553 ~ 19451392 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU79649
acgtgtgtgtgtgtgtgtgtGTGGAAATgatcaaattaaaaacaagatcCCTAAGTACAACCAACATTTTTTAGAAATGCAATTACTCAACATCAACATCCTGCAAGGGACTCAGtatcaccattatcatcatcatcatcatcatcaaactagTGTCATGAACATTTTGGGTGAATTGCTACTCATTGTGGGGTTTGTAGGAAGATCTAAagtaaaagaaacaaatgaacacGTGTTaatgatggacagacagagacacagtaaACACACGAAGGAAACGGAAACCAGTCAAAGACCATTAAATCATGAATCGTGTCACTTCATCTGGCAGGCCTAAGTGCAGCCAGGTCAAAACCACCCAGTGAGAGGTACCAGGTCAGATTGCTGCACATGCAATCGCACAAACTGTATATTCAGTGCTGTAAATGTGGCACTCATATACAACGCGTACTGCCAGGAAGAAACAGAAGGTACACTCACACCTGACTGCGGTTTACATTTGGTTATGATAAACAGGCCcacgctgacacacacacaacaaggcCCCTCAGTAACAAAGACGGCTCAGATAACTGCCACTGAATTCCCGGATAAAAGCTCACGACTAATATCTAGGGCGGTTAAAAGCACCAAAACGTTAGCGTGCCAGGCTAATTTGCTTAATTTACCTTTCCAAATATCACACTAGCTCACCCGCCAAATAAATGGTTCTACTTCCTACTTGGTGAGCTAACTGTGTGGCCTGCTAGCGTTTCACTTCCATTCATGAGCTTTACCTCGCCTCCCAGTGAGGTTTAACTCCCAGTGAGAAACCGCTTTAGCGTTCTGCGTTTAGTCACAAAAGAAGTCTTGAGAAAGAGTCATTGAACGCTGTGTGACTTTCTAGAGCTTTACAGTTTTATACAGCTCTCTCAACGCTACACAACAGCGAGCGGCAGCATGGCGAGCTGCTTCCTCAAACAGTGGGCGGGTCCAAATGACGTGACTTCATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU79649 True 992 lncRNA 0.44 2 19382553 19451392

Neighbor

gene id symbol gene type direction distance location
trmt44 trmt44,LOC107710993 coding upstream 9798 19354380 ~ 19372755 (+)
etnppl etnppl coding upstream 43846 19328031 ~ 19338707 (+)
LOC113540597 col25a1,LOC102793499 coding upstream 55176 19170699 ~ 19327377 (+)
ppp1r15a NA coding upstream 428553 18951047 ~ 18954000 (+)
sod3a NA coding upstream 530973 18849165 ~ 18851580 (+)
LOC113540575 slc2a4,LOC100136445,LOC100136540 coding downstream 3634 19455026 ~ 19470962 (+)
LOC113540207 eif5a,LOC107691471,LOC106608670 coding downstream 29663 19481055 ~ 19485146 (+)
LOC113539894 bank1 coding downstream 200505 19651897 ~ 19694516 (+)
LOC113539773 LOC108267568 coding downstream 415759 19867151 ~ 19872149 (+)
slx1b LOC108267068,LOC108436203,LOC107677699,LOC107583271,LOC105020774,LOC107721665 coding downstream 430536 19881928 ~ 19886701 (+)
G67208 NA non-coding upstream 6833 19373556 ~ 19375720 (+)
G67205 rpl34,LOC107573163,LOC107566275,LOC107681344 non-coding upstream 30649 19345844 ~ 19351904 (+)
LOC113540244 NA non-coding upstream 259929 19120838 ~ 19122624 (+)
G66887 NA non-coding upstream 471156 18911057 ~ 18911397 (+)
G66888 NA non-coding upstream 472065 18909646 ~ 18910488 (+)
G67227 LOC108267906 non-coding downstream 23103 19474495 ~ 19475474 (+)
G67236 h2afvb,H2AFZ,LOC103038819,LOC105895420,LOC101065890,LOC100694115 non-coding downstream 47817 19499209 ~ 19501228 (+)
G67262 NA non-coding downstream 92654 19544046 ~ 19641619 (+)
G67271 NA non-coding downstream 167290 19618682 ~ 19621531 (+)
G67291 NA non-coding downstream 292248 19743640 ~ 19760630 (+)
G66864 NA other upstream 523901 18856456 ~ 18858652 (+)
G66492 LOC108267609,LOC108437090 other upstream 1173989 18197312 ~ 18208564 (+)
frem1a frem1 other upstream 1238922 18113433 ~ 18143631 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other upstream 1371591 18000158 ~ 18010962 (+)
LOC113539940 NA other upstream 1762474 17609492 ~ 17620079 (+)
dock11 dock11,LOC107683516 other downstream 539292 19990684 ~ 20067220 (+)
fcer1g LOC100305060 other downstream 696403 20147795 ~ 20154777 (+)
G68232 LOC108267516 other downstream 1568866 21020258 ~ 21033753 (+)
plag1 plag1,LOC107570635 other downstream 1862826 21314218 ~ 21323967 (+)
mettl4 mettl4 other downstream 2177684 21629076 ~ 21640157 (+)

Expression


Co-expression Network