G67271


Basic Information

Item Value
gene id G67271
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 19618682 ~ 19621531 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU79734
TATCTTGTctaaaacatcttaaaatatcatgtaaaaaAGTGTCTTGCCCAAGGAATCTTAATGTATTTTCTCTAAATACGCTTGACCAAAGTACCTGAAAGTATCTTTTCCAAAGTGTCTTATCCGAGGTATCTTAGAGTATCATAGAGTATCTTAGCGTTCTTGTCCAAGGTAACCTAAAATATCTTGTCCAAAGTACTTTAAAGTATCTTGTGCAAAGTATTAAagtgttgttcttcttcttttggctgctcccgttagtgGTCTCCACAGCGAATCATTGGTTTGCATATTTGATTAGGcagtttttacgctggatgcccttgctgatgcaaccctccccaagtttatccgggcttgggactgtcttgtgcaaccccagtggctggggtggGGCCCTGGCTGAGAATTGAACCCGGGCTGCCGCGGTAAcgactagtcctccagggacctccAAAGTATCAAAGTGTCTTGTCCAAAGTGTCTTGTCCAAAGTGTCTTGTCCAAAGTGTCTTGtgtgttttttttttttaaatatctttcatCCCTGCCCAAGTGTGCTGTCATTATATTTAAACTCACAACAAAAAATGGACTTTCTTTCGGTTTACTACCCCCCTTGCCTTGCTTGATGGACAGCCAGTAAATAGCTAAGAACCTTCTACTGTTCTGAAATATCCTGAATGTTCCAGGTGTTCAGAAGTTCAGCTCGGGGGGAAGAATCAGTTTTGACAAAGCATAAAGCTTACATGGTTTCAAGTTCTCTGAAGTGCTCAGTCAGAGACAGACCACTTAAATCTAATTAGCATTAGAACTGAGTAATGGCATGTATTGATTGTGAAATGCTCACTATTGACAAAAGCTCACAAAATACTCAACAAACACAAGATTGCATTTCCATAAAAATGTACAAGCCCATAGCATAGACTGTAACCAGAAATAAAGCAATAGACCTCCAAACACTCTGTTTCGCTCTGCCACATTAAtatgcacataaacacaataCAAGGAAATACAATTCCAAGAAGCATGAATTGCTTTTAACCACAAGCCAAGTTTTCATTTCAAACAAGTCATGTGTGGTCTGAATACGGACCGACAATACGTGTAATCCAATAATGGTAAATGGTAAACATACTGAAACAGGCCAATcatcttttatattttcctcTTACTGCAGATCTTGCAAAAGCGACGGTGCAAGGTGCAACTGCAATATGCAGCAGCGGTAATGGCTTGgcaaatttaaaaagtcaccTGAACAAACAGTGGTAATGCAGTCCGCTGATGGCATGGCAACAACATGAAAGAGCTTCTAATATGAGGGAGGGAGAACAAGCACCTGAGATAAACCCCTAAACTGCACATTCACAAAATACCATTTAACAGCAGGCAAATTCATGATCTCGATTTGGTTTTCCATGCAATTTCATTCAAGAACGCCGCTGATTCTGCCTCATTTGCACTCAACCACTGCATTAAATAGAGTGCCACTATTCCTCCTTATTCGCTGTGACTAATGACCATAGACGGTGTAATACATAACCTCTGCCTACACCTGAAGTGCTGCGAATCACAGAGTCTGCAAAAGAAAAAGCGGAGAAACAACATGAACTGTGAGAGAATATTAAAATGTCCCAAACCCCTGCTGTAGTGAGCAGGAACAAATTTGCCCTAAACAAAacggacacagggagaacatgcaaaactcccccctgagctcaggactgaaccgaGGACCCTGAAGCTGCGAGGCAGCAATGATGTTTAATTCGGCTGGACCGAATATTAAATTCCCTATtactaaacaaaagaaatgtataaatgagaCGTGTGTGTGAAGGCTGAACACACAGCCTCGCTTCAAATTCACCAGTGACACGTAACGTACACAGCACGTTTATCAGGACCGATTTTCACAAACGGCTTATGAGATGTTCtcagcagaaaagcagaaacagaGACTAATTATTTAACCATTTCTGGCTGTAACTAAACTATTTTCAATCAGGATTTTCCCTACTGCGGTGCAAATGTACAGTAAATCAGTAATCAAAATGCATATTAGCCATCATCCTCTAGGAACATGGACCTACCACGCTCTGCTACAGTAATgtaagaataaatataaatattcttccTTATAAAATTAGCATAAAAAATCTCACACATAAGAATTGTGATCTCAATTCTAAGCCGAATAATCGTGATCCCTATTTCGTCAAGACACAGCGAGCACTGAGGCGTGCTTCATTTGCATGACGTTAAGCTCATATGTAGACCAGAAGAAACTGTTAAAACTAAAGCTCCTGTCCAACGCTAAAGCCAGCTTCCTCAGGAGTCATTTGCATGGAATCCTGTTCCCCCCAAATTAgcagctagcatgctaacaggCAAAGCAGATTCCATTACATTCCCTGAAGTTAAGCTTCTCTGATCCGTTTATGCAAGTCATAGGCTGAGCGGGTTAGCCGCCTTTCTCTGGAGCAAATCTGAAACATGCAATAAGCTAATGCAAGAGTAATTTAATCAGAGCTTGTCGAGACCATGACTTCACTCTCTAATATTGCAGGTTGTGTTTTCAGACAATAGCTTCATGCAATGTTTCCAACACAAAGCTAATGTCACATTTGGCTCAAGGCATCAGGTGAATGAAGAACATTTTGACGTCTTGTAACGAcactaatgtattttaaaacatgTGGGTCAAGACTTGAAGACATTAGAGATTAAGAcgataaaataaaagcataaaatttatatccacAACAATCTTATAtcagatataaagtgaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU79734 True 2796 lncRNA 0.40 2 19618682 19621531

Neighbor

gene id symbol gene type direction distance location
LOC113540207 eif5a,LOC107691471,LOC106608670 coding upstream 133536 19481055 ~ 19485146 (+)
LOC113540575 slc2a4,LOC100136445,LOC100136540 coding upstream 147720 19455026 ~ 19470962 (+)
LOC113540663 cpz coding upstream 211055 19394155 ~ 19407627 (+)
gpr78b gpr78,LOC108267410,LOC103025717,LOC107554869,LOC107397001 coding upstream 225564 19388605 ~ 19393118 (+)
trmt44 trmt44,LOC107710993 coding upstream 245927 19354380 ~ 19372755 (+)
LOC113539894 bank1 coding downstream 30366 19651897 ~ 19694516 (+)
LOC113539773 LOC108267568 coding downstream 245620 19867151 ~ 19872149 (+)
slx1b LOC108267068,LOC108436203,LOC107677699,LOC107583271,LOC105020774,LOC107721665 coding downstream 260397 19881928 ~ 19886701 (+)
si:ch73-71d17.2 LOC108267752 coding downstream 322209 19943740 ~ 19953223 (+)
ntn4 ntn4 coding downstream 349780 19971311 ~ 19983277 (+)
G67236 h2afvb,H2AFZ,LOC103038819,LOC105895420,LOC101065890,LOC100694115 non-coding upstream 117454 19499209 ~ 19501228 (+)
G67227 LOC108267906 non-coding upstream 143208 19474495 ~ 19475474 (+)
G67209 NA non-coding upstream 167290 19382553 ~ 19451392 (+)
G67208 NA non-coding upstream 242962 19373556 ~ 19375720 (+)
G67205 rpl34,LOC107573163,LOC107566275,LOC107681344 non-coding upstream 266778 19345844 ~ 19351904 (+)
G67291 NA non-coding downstream 122109 19743640 ~ 19760630 (+)
G67289 NA non-coding downstream 142729 19764260 ~ 19766422 (+)
G67287 NA non-coding downstream 190433 19811964 ~ 19822848 (+)
LOC117597044 NA non-coding downstream 199647 19821178 ~ 19824259 (+)
trnah-gug_4 NA non-coding downstream 206780 19828311 ~ 19828382 (+)
G66864 NA other upstream 760030 18856456 ~ 18858652 (+)
G66492 LOC108267609,LOC108437090 other upstream 1410118 18197312 ~ 18208564 (+)
frem1a frem1 other upstream 1475051 18113433 ~ 18143631 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other upstream 1607720 18000158 ~ 18010962 (+)
LOC113539940 NA other upstream 1998603 17609492 ~ 17620079 (+)
dock11 dock11,LOC107683516 other downstream 369153 19990684 ~ 20067220 (+)
fcer1g LOC100305060 other downstream 526264 20147795 ~ 20154777 (+)
G68232 LOC108267516 other downstream 1398727 21020258 ~ 21033753 (+)
plag1 plag1,LOC107570635 other downstream 1692687 21314218 ~ 21323967 (+)
mettl4 mettl4 other downstream 2007545 21629076 ~ 21640157 (+)

Expression


Co-expression Network