G67453


Basic Information

Item Value
gene id G67453
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 19333074 ~ 19339158 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU79923
agttttctttgttataaAATGCTGCACTTCCCTCAAACACTAGAGGGAGACATTTAGCATTACAGGATCTGTAGTAGGGAACAGTTTCATATACGCCACACTCTTTTGTTAATGTGTGCTGAGAACACAGTGGTACAGCCAGTGTTGTTAGACCTCCTTTTCTAATGCACCACTAAGATCATGGCAGTTTATTCTGTGGATCACCCAGAATCAAAAGCTCTGTGATTTAACACCACCATATGGCTTTTCAGTGTGATACTTGCATCAGGCACTCATGGAAGATGATTGCAGATAGTTTTGCTTATATTCTAAAGATAAATGCTTTAAACAAATTGGAAAATGTATCTACTAAGAGAATAAGACACTTTCAAAATGACTAGTAATGGCCTACTCTTATACTGCTTTTACAGTAATGTCATCAGAAATATTACAGTAGATACATTTGCctatatttgagattttttatttttattttttttaaacttaatcgCTACAAAATATCACTAAATACTTTACCTGTCatatcacatttatattttgcacaaaattagaatataataatctaaaatataGGAAATGGTTTTACTAATATTTTGTGATAACCAAGTGCAACCATGAGTGGCCTCCATGCAGGACATTTTAAGGTCTTTTCCACTCCATTACAGTTGGACAGGCCAGTGTTTCACAAGCTGTTCTGATCATATGAGGGCATGCTGAAAGTGGCAGAATGCACTCACTTCAGTGTGTGCTCATGTCAACAGCTTACGCACCAGCGGCTGTGTTCAGCGAGTGCATGCGGAGGAGCACGCTTGCCTAATACATCAGTGTAATGTTTGCATGTAAAAGAACAGTGTGAACTTTGCACGACTGATTGCATTGCTTTTTAGCACTTTGTCCCTcctatttcctgttttttaaaaaatttgtgtAGAAATGCAAAACTACACGTTCATCATTACAGCTTGATGCTGATTTAGGCACCCGATTCAATCTTTACATGACACATTatgtatgaattttatttttagaaaatgtgGTTAAAGATATTCTTGCACTTAGAATACTGTACATGATTGAAAACCCTCTAAGTTCAACATGGTTTGGAATCTCATTTCCCCCTGATGTTACGTTTTAATATGGcatcattaaatattataaatagttAGCACCACTTACACTCcctgacaaaaagaaaaattgtgagcaattatatacaaaataacACCCCCTTTACTTTTAGATCATGAGGCACGTTATAAATCCattaaaatatggaaataattatcaaaagattGATCTTGATCCATAAGTTTcatatataatgttaatgtatAACTAATATATAAGGGGCCAGATTAGACTCCCCACATCAAAATATCTGAGGGCTGGtcactaaaatattattttaaagctcCAATATAGTGAATTTAATTTTAGTGGAATAACTGCAGTATGATATAACCTGACAGCTGTAGTTGTGACACGCAAGAtaatattcataaattcatGCTTCTTATTAGGACAAATGACACTGACTGCTTGAGTTAAGGACTCTCTCAAGAATTCATGACAGGTTTTCCATGCTTAGTGGTTGGAAGCATTGCTATTCATTATCTCTAGTAATGTTCTGTGCCCTATTTGCTCTGACAAGATGTTGCGTCTGCCAGGATAGCTTTCAGCTGCTTCAGTTTCTCTGCCCTCCCATCCtctgaatattttttgcattgctcATGATTTGTTTAATAATCTCTCATCATATTAAATTCCTTAATTACTGCAACAGTCTCAGACATATGAGGTACACACATTTGCTATGGCTCTCTGTGAAAAAGTATTCTTGTTTCCAGCTCTTTTGAAATCGCTCCTTCTCATTGTTAACTTTGCACTTTTTGTGTGTACCCATGACTAAATATCattcagtaaattaatttgtaagtgtagtcagagaaaaaaaaggctcttgCAATTTAGCTTACTGTGTTAACACTCAATAAAAATTTGTTGGCCACTATGTGTTGGCTAGCAGGCCACCTATCGTACATTTTAAGAGCGAAGCCACAGGATGCATTTGGCCCTGAGGCTGGACTTTGGacagatatataatataatgttaaaaGAAGAACAAGGTTTGTTATGTTCTTCGTCTTTTGTTAGTCTTAATTATGTGATGTTTGCCACTGATGCCACCTGAATGAATATCATGGCCATTTTCCTCGCCTGACTCCTGGGGACGAATGAAAATTCAATGAATTTATTAGTGCATCTAGCTGACAAttcaaaatatcactttttatattatttttccatCAAATACTTCAAAATGGCTACTATGTCTGCTGCAGTTAGATAATACTGGTACTGCTACAGATGATATGGAAGATTGCTGTGTaggttatttttctttaaaaaaaaacaactttcctttAACTTTGACTCCAACTTACCTTGCGCTTGCTTTGTGCATTTACCGTGTCTGTGTTGTCAGATATATGGAGGCCCAAAACATTCTCAAGGTCTTAAagtaaaaacataaaagcatTAAACAGGAGTATCAAGTTGTAAActacaaaacataaacaatatatatttgtCTACCATCGTTACCTGTTAGAATCTGCTCAATTTTTCCAACTGCCAAGTCAGCATCCTCTCTGGAGAAGCACAGGGGTGGTTTAAACTTCAGGACGTTACGGTGTGGTCCATCTGCACTTAATAAAACCCGCTGATCCTTCAGTCTGTGGGAAGGCCAGAATGTCCATCATCTCCATTCAGAGGTGATATTTCTGTACTATATCACTTTTGATTggtgaatctgagcagaaataAAGTCTTTAGGGAAGGGATTAtcaatcttatctgcaaagggcGAGCGTGGCCACTTGTTGGACACACACATGATAATTGTTTGAGAGCAAAGATGAACCGTTAAAACAGGTGGAATCAAGTTGTGGCTTCTTTTTGGTTGAAAtgaaacctgcagccacactgacCCTTTGCAGGTATGATTGATGACCCTTGCTGTAGGGTGTTTAGGTAACTGTCAAAGGTTTTCACCTGTATATGACATCCTGAGCTTCAGCTGTTGCAGGGGTTCTTTTAAGCCGATCTTTCACCAGCTCCACCCCAACAAAAAGGCCACAAcctctgaaaaacacacagccttcatttttcatgcttttacATTTGACTTTAAAACTATGTAACAATGCCGCTCTCAGACCTGGCACTCCTTAGAATATTCGGAGGTGAAatcttttgtgatttttatggCGTAGACAGTATTAACGCGCACAGTTCAGTTTTGATATTAAGTTAAACTAGATTTTATATAGCTATGTTGGTAAAGTTGCTGAAAGTTTCACAATTAATCAGTTATTTATTGAGATgtatatcaaaataaaaaaaatgaatttgaaaaataCGAACAACAGCCTGAAAGCGATAAGaagaaagcattttaaaaagacCTGACGTCTCCCACTAAGGGATGTCTCTCTTTCAGTTTCTCCAGTAAGTCCGTCAGGTATTTCCCTACTCGCAGGGCATTGCCTTGGAGATCCTCTTTCTCAATCACATCCAGTACAGCTAGCCCAATAGCACAGGATACAGGATTACCACCAAACTGAAGCATACATAAACAGACATTCTTCAGTCAGGTTAACATTGTCCATTCGATAAAATTAAGAACATTATGAAAGCACCATTTTCATATCTCCTTGTTATAAAGTGTCATTCTACcagtgaaaatgattaaaagtgtaGCTCTGGTTCTCACTGTGTTAAAGTACTCCATTCCAGATGACATGAAGCCTTCAGCTACCGCTCTGGTGGTCACTACACAGGACATTGGATGTCCATTCCCAATCGGTTTGCCCATAGTGACAATGTCAGGTATAAAGTCTTCCCCTTGCAGCTGGAAAGCCCAGAAATGGGAGCCTACCCTTCCAAAGCCGACTTGAACCTCATCAGCAATGAAGACGCCCCCAGCATTTCTGACGTGTCTGTGGATTGtgttgtatacacacacaaatgcagagttgtatttgtgcacacacacacatggtatACAGTACGAattgtataaactgtatatacatatacattcatACTAAAAAAAACTCCATCCTGAATGACTTGcctatttattttgtaaagaaatacTGAATTGCTTCTTTtagtttaaatttctttcatcgatatgttggtctattttcactttggttaacggtttcctattacccacaatgccgttcaaCTACTTGCTGACAGTGGTGTGAGTGGGAATTAGGTCTCGCCTTcgtctctacctaaagagaccGATGCAACAGCGCTTTATTCCTTTAGTCTCTTCACATCTCTCACGTCATCCGCTAATACTGCCAACAGTGCCATCATGCTTTTCATCTCCCGGATGGCTAACTCACCGAACCGAGTCTCTATCATAACTCAGCATTCTGGAAACTGGAACTCAACCTTTTCTATCTCCACTACTGCTatattggatttctcattaatatgacattgaatgtcactgaaaaatagtgagtaagaaaaaagaagatCTTGCTCTATTGGTTTTAGGAGCTAATAGTGAAACCTGACTGTGATCagttatgtttgagattgtagaaattttttctcctattaaaaaCCAGAGTAACTGTGCTCACAATGTCCCCCTGAGCTGTCAgcacacaactgctaacttcttacacgaataatgaaaataacacCAGAATCGCCTGATCACACCCcgaatatttcaatataaacatatttaatgtgtttcagggtggactttttCTTTAATATGCACTCAGTGCAGAAATGGGTCAAGAAGATTATTACTTTAGAAAAGCCAGATGACAAAATGATAACATAGCCAGCAATGGATCTAGCAATCATCCTCACTATAATATAGAATAGAGAGCAGCCAGGAGTAGCaattcaaaagaaaataaatacaatttgcaTTTGACCTGAAGTGAGTcagcaacacatttttatattttgctaattAAACACACTTTAACTGTTTGACTGCTGGTACATACTGTGCCACTTTCTGGAAGTAGCCCACTGGAGGAATGACCTGTCCTCCACAACTCTGCAGTGATTCAGCAATGAAAGCAGCAATCTACACAAGAGAAGACCATGTAAGACCCCAAACCCCAACTGCAACAAGTGCAAAGAGGTTGCATACCCCATCTAATAATGTGTGCTCCTTTCAGGAGCCATCTGGCTAAACCCAAGAGCcagtttaaagttaaaaGAGCaggaaaaagacatttaaagaaGTCATCATGTACAGAGGGCACTTCTTTCAGAATCCAGGAATAAACACCCAATCTATTTCTCTTTATGTGAGCACTCCGTCCCTTCACCTCTGTCTTCATTCCATCATGAGAAGTCTGGATCTCACTTATCAGATATGTCTGTCTGAAGGAACAGACATTTAATATAATAGAGGGTTAAGGGAAATTTGACCATGTGCAAATCAGTGAGATCTTAAGGCTTTGTACAACCTGGAAAGAAGGCACAAAGAGAAAAGTGGAGAAAGGGAAAAGGATGAAGTCAACTAATGATGAGGAACTGGAGAGACGTCATAGAAAACCACTGTTTGAGGATGTGAAAGACCATTCAAGCAGTATTCACCTTCAATTAATCCATGAAGTAATCCATAATCCATTAGTTTATTGAATTTGATcacatatttttgtatttaagttACTCTTTTATActatttgataaaaaaaaagtcatgcgGTAATGTATTGTTGACTATACCTTGTGTCCTTTTGCATGAGCTTTTTCAATGATGTCTTTAACTTCATCTGCATAAGCAGTAGCAGGGTCTGCGTGGTCTTCCCTGTATTTCCCTCTATATGTGTCTGGACTTGGAGCCTAATAAAACAATGGTTTATGGAAAtgggaaatatttttaaagttatCAACACAGAATTTTCTAAACTTTGCCAACTTTTATGAAAGCAGCAGTTTGAGA

Function

NR:

description
catalase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU79923 True 6004 lncRNA 0.37 3 19333074 19339158

Neighbor

gene id symbol gene type direction distance location
LOC113540739 NA coding downstream 110231 19222739 ~ 19222843 (-)
LOC113540506 LOC108267151 coding downstream 283626 19044822 ~ 19049448 (-)
larp7 larp7 coding downstream 290805 19034492 ~ 19042269 (-)
plin2 plin2,LOC100304704,LOC100526709 coding downstream 304176 19025133 ~ 19028898 (-)
LOC113540750 NA coding downstream 315674 19017270 ~ 19017400 (-)
ostc ostc,LOC107568856,LOC107558957 coding upstream 1475 19340633 ~ 19344519 (-)
rpl34 rpl34,LOC107566275,LOC107573163,LOC107681344 coding upstream 8482 19347640 ~ 19351961 (-)
LOC113540492 hmx1 coding upstream 87183 19426341 ~ 19429551 (-)
LOC113539975 NA coding upstream 94235 19433393 ~ 19444394 (-)
LOC113540585 LOC108267915 coding upstream 105538 19444696 ~ 19451408 (-)
G67016 NA non-coding downstream 385535 18947318 ~ 18947539 (-)
LOC113539972 NA non-coding downstream 818356 18499351 ~ 18514718 (-)
G66651 NA non-coding downstream 946084 18386561 ~ 18386990 (-)
G66387 NA non-coding downstream 1312265 18015144 ~ 18020809 (-)
G66355 NA non-coding downstream 1468191 17864010 ~ 17864883 (-)
G67527 NA non-coding upstream 266334 19605492 ~ 19656442 (-)
G67528 NA non-coding upstream 277290 19616448 ~ 19629949 (-)
G67535 NA non-coding upstream 430199 19769357 ~ 19824919 (-)
G67556 NA non-coding upstream 448803 19787961 ~ 19788548 (-)
G67562 NA non-coding upstream 491392 19830550 ~ 19830750 (-)
LOC113540242 adamtsl1 other downstream 177853 19050150 ~ 19155221 (-)
map11 c7h7orf43,cunh7orf43,si:dkey-3k24.5,LOC107687048,LOC107594676,LOC107754664,LOC107561780,LOC105895567 other downstream 1493159 17792226 ~ 17839915 (-)
G66281 NA other downstream 1698206 17593748 ~ 17634868 (-)
rnaseka LOC108267746 other downstream 1888886 17439477 ~ 17444188 (-)
G66053 NA other downstream 1930610 17400594 ~ 17402464 (-)
zgc:112271 bola2,LOC105907194,LOC108436240,LOC105020731,LOC107569065,LOC106511278 other upstream 540810 19879968 ~ 19881640 (-)
G67587 NA other upstream 549021 19888179 ~ 19888726 (-)
LOC113539792 LOC108267751,LOC108440128 other upstream 580322 19919480 ~ 19943834 (-)
snrpf snrpf,LOC106609479,LOC107738052 other upstream 623424 19962582 ~ 19965851 (-)
znf16l LOC108268318 other upstream 1439380 20778538 ~ 20825520 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G57434 etnppl non-coding NC_056705.1 CM032074.1 33698586 ~ 33700570 (-)