G67527


Basic Information

Item Value
gene id G67527
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 19605492 ~ 19656442 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU80028
tttttttttgttttttttttttggggtaaaTCCCTCTAGCAGCCGAACATTCAGTGCAGCGCTGCTATGAATGCTAGTCAAGGCTGTGAGTGATAAATAGAGCAATTGTACTtgctaggggtgtaacaatgcAGTGTATAGTAATGTATTGTTCGTGATGATGCTCACGATTCGATATGTCTGGGTATCGAACAGTACATTTAACACactgcataataaagtaggCTATTCGTCATGAAATACCAGTGtaataaacattcaaacatAATCAAGTCTAAACTCCTTCCTGTGAAAAAGTTACTTCCTCTTTATcttgaagcagaaaaaaaagtacattgaTTGGTTATGCATGCTGTGTAAGAATACAGCCTACAATTTGTACCTTTGACAGCAACTTTGTGCTATTTTATATCCTAACTTGCACAAGTATTTAAGTTGTAATTCTCAAAAGCTGTTTTTCAAGCTTCGTTCAAAAGCATAAACaaccaaatgaacaaaaatcatttgttttctgAATAGCGTTCATAAAGTCCTTACGTTTTTGTTTGGcgtattttaaaatgtctttaatttactatacattgtttttttctcatgttaTTACGGCGCAGTAAATTTAGTAATTTTATCACTGTTcgtataatattataatgtgaTATAATCTGGTTAACCAAACAGATAATCAAAAGTTTTCCCATGCTGAACTTAATGCAAATTGATGCAATAGGTTTTTCATTGTGACTGTGATGGATCTAGTCATTTCCTTCTTGAATGTGCAGGGAAAACAAATCTGTTCCGTCTCTCTTCTATTACGCTGTCTCTCAGTATTATTTCACACCGGGGTGCACAATCATTCAGGTAAAAAtgtcccatcacacacacacacacacacacacaggagcagtCTCACATACACTGTTCCACACACCTCACACCCGGATGACGCAATCACGAATGCTTTCATAGTGCTTAACAACTCTGCTCTGTGTTCACGCTCCTCTGGGAGGCTGCTGGGGAAGAATGAGGTGTAATTACTTTAGCCGGCATAGCCACATGGCGCTTCAGATTCTGTTTGATGTGGGTCAGGCTCTCAGAGGGCCCTGCAGCGGGTGCTAAGCGCACCAGGCTAAAATAGAGCATGCTCATCCCTGTGCTGTGTGCCGAGTcattacatttcacacataACGCAGGAGGCAGAggagaggatagagagagagaagccttCACTCCCTACCAGGTTTCtgccctctctttctttcactcccTGCGGACTCCCCTCTGGAGGATCTGCTCAGCCTCAAGCTCCGAccagcaggggaaaaaaaaaagtctgactctgttttaacttcatttttattcactcCTATTTAGTGTATATGCTGTGAATGTGTAGTATCTGGTGTGCCTGACAGtgaaaaaacacaatattaagAATCGACTGGGCTACAACTTGTAAATCAACAGCTGGCAGTCTGTTGTTGTGCTTTTGATGGATGTTTGAACACAAAATACAAATCTCTGAGCTCCATGTGGAGTAAAGTGGAATCTCATGCGATTCGGAAAACAGCTACCCCAACATaaaatggtgtgtgtgcgcgtgcgtcgTGCGCGTCTTCTTTGGATGAGTGAGCAGAGAACCCAAACCCTGGTAGCGTAATTTAGAGGAACAAACAAAATATGTTGACAACAGTAATGTGTAAAGTAATATTTCCCATCCTAATGATGGAAGTAAGATGGAAGTAAATCTGGATAGAAGGGCTTTGATCCTCATTGAGACAGATATTTTTTACTCGCAAGTGCTATATTTTACTAATGATTGGTTGATTACGGTGAGAATTCCCCAATGATTGTATGGTGTATTTATGCTAAGGTTGAGATGCAGTCATGCACCACAGACTACTACATGTCATGACACGTGATACTTGGACAGGAAGCACAGGTACATTGGCAACTGCCCAAGTATATTTTGTTCTATTTAAAAAggattgtattttatttattaatctgatAAAATCATTAATCTGATAAAATGCCGCACCTCGTGTAAGAGATCATGGCTCTTATGCAAGAGTAAAAAACCATTGACTGAAGCAGAACTGAGCAGGAACGGTAACTTTTTCTTAAATAGGATGAAACTGACTTATCTTAACAAAAGCTGTTCTTATGTAGTTTTAtccatctttttttatatttattgattgGCATATAAATTTCTCACATTAAAATTgcacaaaatgaagaaaaggaaaTTGTTCAGATGTTTGTTGTTAAACCATGATAGATATTCAAACACTACAAATGTGATTTGTAGACATTTTCGTAGACCTTCGTTGTACAGACATTAACAGCTAGCATAAGTATTGTTACAAGTTAAGTGTTCAGAGAACACATTGACATTATGCAGCAAATTCTCAGTGAATAAACCAGTGTACTACTTCAGACGCACCGAGCCCAATTTCtcatgactttatttatttaccaccCTTATTGAAAATTTATTTGATCATATGCCAAAACTGATTTTGTCTGATTTTTGGCTGTAAAAGTGCAGTGGGTGTATAAAAGGATCACCTCACTTGATAAACTGTGCTTAAGACCCACAGCACTCATGAAGCAGCCTAAGAGTAAGATAATAAAGTCAAACGGCTTCTGAAAGTATCCAGATCAATTCAgtttttgcacactttattgAGTTGTAGATTATAgataaaatggattaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU80028 True 2720 lncRNA 0.38 3 19605492 19656442

Neighbor

gene id symbol gene type direction distance location
LOC117597194 NA coding downstream 69421 19523380 ~ 19536071 (-)
LOC113540415 ddit4l coding downstream 89172 19514154 ~ 19516320 (-)
LOC113539790 h2afvb,H2AFZ,LOC103038819,LOC105895420,LOC101065890,LOC100694115 coding downstream 104249 19499187 ~ 19501243 (-)
LOC113539952 gps2,LOC106608669 coding downstream 109586 19487951 ~ 19495906 (-)
LOC113540670 ybx2,LOC108267906 coding downstream 126292 19471851 ~ 19479200 (-)
LOC113540206 nfib coding upstream 91834 19748276 ~ 19835958 (-)
zdhhc21 zdhhc21,LOC107677703,LOC107691467,LOC107743939,LOC107739372 coding upstream 191140 19847582 ~ 19864051 (-)
LOC113540446 NA coding upstream 244972 19901414 ~ 19911059 (-)
si:ch211-212k18.7 LOC108267884 coding upstream 255291 19911733 ~ 19918428 (-)
amdhd1 amdhd1,LOC107683519,LOC107738078 coding upstream 296723 19953165 ~ 19957947 (-)
G67454 NA non-coding downstream 264963 19328348 ~ 19340529 (-)
G67453 NA non-coding downstream 266334 19333074 ~ 19339158 (-)
G67016 NA non-coding downstream 657953 18947318 ~ 18947539 (-)
LOC113539972 NA non-coding downstream 1090774 18499351 ~ 18514718 (-)
G66651 NA non-coding downstream 1218502 18386561 ~ 18386990 (-)
G67535 NA non-coding upstream 112915 19769357 ~ 19824919 (-)
G67556 NA non-coding upstream 131519 19787961 ~ 19788548 (-)
G67562 NA non-coding upstream 174108 19830550 ~ 19830750 (-)
G67719 NA non-coding upstream 409621 20066063 ~ 20067059 (-)
G67757 kirrel,kirrela,LOC108440115 non-coding upstream 471184 20127626 ~ 20132037 (-)
LOC113540242 adamtsl1 other downstream 450271 19050150 ~ 19155221 (-)
map11 c7h7orf43,cunh7orf43,si:dkey-3k24.5,LOC107687048,LOC107594676,LOC107754664,LOC107561780,LOC105895567 other downstream 1765577 17792226 ~ 17839915 (-)
G66281 NA other downstream 1970624 17593748 ~ 17634868 (-)
rnaseka LOC108267746 other downstream 2161304 17439477 ~ 17444188 (-)
G66053 NA other downstream 2203028 17400594 ~ 17402464 (-)
zgc:112271 bola2,LOC105907194,LOC108436240,LOC105020731,LOC107569065,LOC106511278 other upstream 223526 19879968 ~ 19881640 (-)
G67587 NA other upstream 231737 19888179 ~ 19888726 (-)
LOC113539792 LOC108267751,LOC108440128 other upstream 263038 19919480 ~ 19943834 (-)
snrpf snrpf,LOC106609479,LOC107738052 other upstream 306140 19962582 ~ 19965851 (-)
znf16l LOC108268318 other upstream 1122096 20778538 ~ 20825520 (-)

Expression


Co-expression Network